Integration of heterogeneous molecular networks to unravel gene-regulation in Mycobacterium tuberculosis

por van Dam, Jesse CJ, Schaap, Peter J, Martins dos Santos, Vitor AP, Suárez-Diez, María
Publicado 2014

GeneFriends: An online co-expression analysis tool to identify novel gene targets for aging and complex diseases

por van Dam, Sipko, Cordeiro, Rui, Craig, Thomas, van Dam, Jesse, Wood, Shona H, de Magalhães, João Pedro
Publicado 2012

RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource

por van Dam, Jesse CJ, Koehorst, Jasper J, Schaap, Peter J, Martins dos Santos, Vitor AP, Suarez-Diez, Maria
Publicado 2015

NG-Tax 2.0: A Semantic Framework for High-Throughput Amplicon Analysis

por Poncheewin, Wasin, Hermes, Gerben D. A., van Dam, Jesse C. J., Koehorst, Jasper J., Smidt, Hauke, Schaap, Peter J.
Publicado 2020

Regulation of Three Virulence Strategies of Mycobacterium tuberculosis: A Success Story

por Zondervan, Niels A., van Dam, Jesse C. J., Schaap, Peter J., Martins dos Santos, Vitor A. P., Suarez-Diez, Maria
Publicado 2018

Consistency, Inconsistency, and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome-Scale Metabolic Modelling

por Pham, Nhung, van Heck, Ruben G. A., van Dam, Jesse C. J., Schaap, Peter J., Saccenti, Edoardo, Suarez-Diez, Maria
Publicado 2019

SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles

por Koehorst, Jasper J, van Dam, Jesse C J, Saccenti, Edoardo, Martins dos Santos, Vitor A P, Suarez-Diez, Maria, Schaap, Peter J
Publicado 2018

SyNDI: synchronous network data integration framework

por Lindfors, Erno, van Dam, Jesse C. J., Lam, Carolyn Ming Chi, Zondervan, Niels A., Martins dos Santos, Vitor A. P., Suarez-Diez, Maria
Publicado 2018

The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation

por van Dam, Jesse C. J., Koehorst, Jasper J., Vik, Jon Olav, Martins dos Santos, Vitor A. P., Schaap, Peter J., Suarez-Diez, Maria
Publicado 2019

Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data

por Koehorst, Jasper J., van Dam, Jesse C. J., van Heck, Ruben G. A., Saccenti, Edoardo, dos Santos, Vitor A. P. Martins, Suarez-Diez, Maria, Schaap, Peter J.
Publicado 2016

SALARECON connects the Atlantic salmon genome to growth and feed efficiency

por Zakhartsev, Maksim, Rotnes, Filip, Gulla, Marie, Øyås, Ove, van Dam, Jesse C. J., Suarez-Diez, Maria, Grammes, Fabian, Hafþórsson, Róbert Anton, van Helvoirt, Wout, Koehorst, Jasper J., Schaap, Peter J., Jin, Yang, Mydland, Liv Torunn, Gjuvsland, Arne B., Sandve, Simen R., Martins dos Santos, Vitor A. P., Vik, Jon Olav
Publicado 2022