Evaluation of clustering algorithms for protein-protein interaction networks

por Brohée, Sylvain, van Helden, Jacques
Publicado 2006

Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution

por Janky, Rekin's, van Helden, Jacques
Publicado 2008

In silico identification of NF-kappaB-regulated genes in pancreatic beta-cells

por Naamane, Najib, van Helden, Jacques, Eizirik, Decio L
Publicado 2007

Pathway discovery in metabolic networks by subgraph extraction

por Faust, Karoline, Dupont, Pierre, Callut, Jérôme, van Helden, Jacques
Publicado 2010

Metabolic PathFinding: inferring relevant pathways in biochemical networks

por Croes, Didier, Couche, Fabian, Wodak, Shoshana J., van Helden, Jacques
Publicado 2005

Fine-Tuning Enhancer Models to Predict Transcriptional Targets across Multiple Genomes

por Aerts, Stein, van Helden, Jacques, Sand, Olivier, Hassan, Bassem A.
Publicado 2007

Machine learning techniques to identify putative genes involved in nitrogen catabolite repression in the yeast Saccharomyces cerevisiae

por Kontos, Kevin, Godard, Patrice, André, Bruno, van Helden, Jacques, Bontempi, Gianluca
Publicado 2008

Transcriptional and epigenetic signatures of zygotic genome activation during early drosophila embryogenesis

por Darbo, Elodie, Herrmann, Carl, Lecuit, Thomas, Thieffry, Denis, van Helden, Jacques
Publicado 2013

Transcriptional regulation of protein complexes in yeast

por Simonis, Nicolas, van Helden, Jacques, Cohen, George N, Wodak, Shoshana J
Publicado 2004

Tracing the origins of SARS-COV-2 in coronavirus phylogenies: a review

por Sallard, Erwan, Halloy, José, Casane, Didier, Decroly, Etienne, van Helden, Jacques
Publicado 2021

Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape

por Griffon, Aurélien, Barbier, Quentin, Dalino, Jordi, van Helden, Jacques, Spicuglia, Salvatore, Ballester, Benoit
Publicado 2015

Ancestral state reconstruction of metabolic pathways across pangenome ensembles

por Psomopoulos, Fotis E., van Helden, Jacques, Médigue, Claudine, Chasapi, Anastasia, Ouzounis, Christos A.
Publicado 2020

Transcription factor regulation can be accurately predicted from the presence of target gene signatures in microarray gene expression data

por Essaghir, Ahmed, Toffalini, Federica, Knoops, Laurent, Kallin, Anders, van Helden, Jacques, Demoulin, Jean-Baptiste
Publicado 2010

Unraveling networks of co-regulated genes on the sole basis of genome sequences

por Brohée, Sylvain, Janky, Rekin’s, Abdel-Sater, Fadi, Vanderstocken, Gilles, André, Bruno, van Helden, Jacques
Publicado 2011

RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets

por Thomas-Chollier, Morgane, Herrmann, Carl, Defrance, Matthieu, Sand, Olivier, Thieffry, Denis, van Helden, Jacques
Publicado 2012

RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections

por Castro-Mondragon, Jaime Abraham, Jaeger, Sébastien, Thieffry, Denis, Thomas-Chollier, Morgane, van Helden, Jacques
Publicado 2017

Sequanix: a dynamic graphical interface for Snakemake workflows

por Desvillechabrol, Dimitri, Legendre, Rachel, Rioualen, Claire, Bouchier, Christiane, van Helden, Jacques, Kennedy, Sean, Cokelaer, Thomas
Publicado 2018

Coordinated response of the Desulfovibrio desulfuricans 27774 transcriptome to nitrate, nitrite and nitric oxide

por Cadby, Ian T., Faulkner, Matthew, Cheneby, Jeanne, Long, Justine, van Helden, Jacques, Dolla, Alain, Cole, Jeffrey A.
Publicado 2017

COVID-19 epidemiologic surveillance using wastewater

por Sharma, Virender K., Jinadatha, Chetan, Lichtfouse, Eric, Decroly, Etienne, van Helden, Jacques, Choi, Hosoon, Chatterjee, Piyali
Publicado 2021

Integrating sequence, evolution and functional genomics in regulatory genomics

por Vingron, Martin, Brazma, Alvis, Coulson, Richard, van Helden, Jacques, Manke, Thomas, Palin, Kimmo, Sand, Olivier, Ukkonen, Esko
Publicado 2009