Genome (re‐)annotation and open‐source annotation pipelines

por Siezen, Roland J., Van Hijum, Sacha A. F. T.
Publicado 2010

PanCGHweb: a web tool for genotype calling in pangenome CGH data

por Bayjanov, Jumamurat R., Siezen, Roland J., van Hijum, Sacha A. F. T.
Publicado 2010

Reduce Manual Curation by Combining Gene Predictions from Multiple Annotation Engines, a Case Study of Start Codon Prediction

por Ederveen, Thomas H. A., Overmars, Lex, van Hijum, Sacha A. F. T.
Publicado 2013

Microbial bioinformatics for food safety and production

por Alkema, Wynand, Boekhorst, Jos, Wels, Michiel, van Hijum, Sacha A. F. T.
Publicado 2016

Transcriptomic signatures of peroxisome proliferator-activated receptor α (PPARα) in different mouse liver models identify novel aspects of its biology

por Szalowska, Ewa, Tesfay, Haftu A, van Hijum, Sacha A F T, Kersten, Sander
Publicado 2014

Comparative Genome Analysis of Lactococcus lactis Indicates Niche Adaptation and Resolves Genotype/Phenotype Disparity

por Wels, Michiel, Siezen, Roland, van Hijum, Sacha, Kelly, William J., Bachmann, Herwig
Publicado 2019

Reconstruction and inference of the Lactococcus lactis MG1363 gene co-expression network

por Omony, Jimmy, de Jong, Anne, Kok, Jan, van Hijum, Sacha A. F. T.
Publicado 2019

Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies

por van Hijum, Sacha A. F. T., Zomer, Aldert L., Kuipers, Oscar P., Kok, Jan
Publicado 2005

Genome-Wide Transcriptional Profiling of Clostridium perfringens SM101 during Sporulation Extends the Core of Putative Sporulation Genes and Genes Determining Spore Properties and...

por Xiao, Yinghua, van Hijum, Sacha A. F. T., Abee, Tjakko, Wells-Bennik, Marjon H. J.
Publicado 2015

SIMAGE: simulation of DNA-microarray gene expression data

por Albers, Casper J, Jansen, Ritsert C, Kok, Jan, Kuipers, Oscar P, van Hijum, Sacha AFT
Publicado 2006

SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks

por Westenberg, Michel A., Roerdink, Jos B.T.M., Kuipers, Oscar P., van Hijum, Sacha A.F.T.
Publicado 2010

PhenoLink - a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching for Lactobacillus plantarum strains

por Bayjanov, Jumamurat R, Molenaar, Douwe, Tzeneva, Vesela, Siezen, Roland J, van Hijum, Sacha A F T
Publicado 2012

Transcriptional response of Lactococcus lactis during bacterial emulsification

por Tarazanova, Mariya, Huppertz, Thom, Starrenburg, Marjo, Todt, Tilman, van Hijum, Sacha, Kok, Jan, Bachmann, Herwig
Publicado 2019

ESSENTIALS: Software for Rapid Analysis of High Throughput Transposon Insertion Sequencing Data

por Zomer, Aldert, Burghout, Peter, Bootsma, Hester J., Hermans, Peter W. M., van Hijum, Sacha A. F. T.
Publicado 2012

Genome-Wide Prediction and Validation of Sigma70 Promoters in Lactobacillus plantarum WCFS1

por Todt, Tilman J., Wels, Michiel, Bongers, Roger S., Siezen, Roland S., van Hijum, Sacha A. F. T., Kleerebezem, Michiel
Publicado 2012

BAGEL: a web-based bacteriocin genome mining tool

por de Jong, Anne, van Hijum, Sacha A. F. T., Bijlsma, Jetta J. E., Kok, Jan, Kuipers, Oscar P.
Publicado 2006

Fermentation-induced variation in heat and oxidative stress phenotypes of Lactococcus lactis MG1363 reveals transcriptome signatures for robustness

por Dijkstra, Annereinou R, Alkema, Wynand, Starrenburg, Marjo JC, Hugenholtz, Jeroen, van Hijum, Sacha AFT, Bron, Peter A
Publicado 2014

Draft Genome Sequence of Lactobacillus plantarum SF2A35B

por Bron, Peter A., Lee, I-Chiao, Backus, Lennart, van Hijum, Sacha A. F. T., Wels, Michiel, Kleerebezem, Michiel
Publicado 2016

Prosecutor: parameter-free inference of gene function for prokaryotes using DNA microarray data, genomic context and multiple gene annotation sources

por Blom, Evert Jan, Breitling, Rainer, Hofstede, Klaas Jan, Roerdink, Jos BTM, van Hijum, Sacha AFT, Kuipers, Oscar P
Publicado 2008

DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites

por Blom, Evert-Jan, van Hijum, Sacha AFT, Hofstede, Klaas J, Silvis, Remko, Roerdink, Jos BTM, Kuipers, Oscar P
Publicado 2008