SIMAGE: simulation of DNA-microarray gene expression data

por Albers, Casper J, Jansen, Ritsert C, Kok, Jan, Kuipers, Oscar P, van Hijum, Sacha AFT
Publicado 2006

SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks

por Westenberg, Michel A., Roerdink, Jos B.T.M., Kuipers, Oscar P., van Hijum, Sacha A.F.T.
Publicado 2010

Fermentation-induced variation in heat and oxidative stress phenotypes of Lactococcus lactis MG1363 reveals transcriptome signatures for robustness

por Dijkstra, Annereinou R, Alkema, Wynand, Starrenburg, Marjo JC, Hugenholtz, Jeroen, van Hijum, Sacha AFT, Bron, Peter A
Publicado 2014

Prosecutor: parameter-free inference of gene function for prokaryotes using DNA microarray data, genomic context and multiple gene annotation sources

por Blom, Evert Jan, Breitling, Rainer, Hofstede, Klaas Jan, Roerdink, Jos BTM, van Hijum, Sacha AFT, Kuipers, Oscar P
Publicado 2008

DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites

por Blom, Evert-Jan, van Hijum, Sacha AFT, Hofstede, Klaas J, Silvis, Remko, Roerdink, Jos BTM, Kuipers, Oscar P
Publicado 2008

Genotype-phenotype matching analysis of 38 Lactococcus lactis strains using random forest methods

por Bayjanov, Jumamurat R, Starrenburg, Marjo JC, van der Sijde, Marijke R, Siezen, Roland J, van Hijum, Sacha AFT
Publicado 2013

Explaining microbial phenotypes on a genomic scale: GWAS for microbes

por Dutilh, Bas E., Backus, Lennart, Edwards, Robert A., Wels, Michiel, Bayjanov, Jumamurat R., van Hijum, Sacha A.F.T.
Publicado 2013

A predicted physicochemically distinct sub-proteome associated with the intracellular organelle of the anammox bacterium Kuenenia stuttgartiensis

por Medema, Marnix H, Zhou, Miaomiao, van Hijum, Sacha AFT, Gloerich, Jolein, Wessels, Hans JCT, Siezen, Roland J, Strous, Marc
Publicado 2010

Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes

por Gori, Fabio, Tringe, Susannah G, Folino, Gianluigi, van Hijum, Sacha AFT, Op den Camp, Huub JM, Jetten, Mike SM, Marchiori, Elena
Publicado 2013

Supervised Lowess normalization of comparative genome hybridization data – application to lactococcal strain comparisons

por van Hijum, Sacha AFT, Baerends, Richard JS, Zomer, Aldert L, Karsens, Harma A, Martin-Requena, Victoria, Trelles, Oswaldo, Kok, Jan, Kuipers, Oscar P
Publicado 2008

A predictive signature gene set for discriminating active from latent tuberculosis in Warao Amerindian children

por Verhagen, Lilly M, Zomer, Aldert, Maes, Mailis, Villalba, Julian A, del Nogal, Berenice, Eleveld, Marc, van Hijum, Sacha AFT, de Waard, Jacobus H, Hermans, Peter WM
Publicado 2013

Genomic and functional analysis of Romboutsia ilealis CRIB(T) reveals adaptation to the small intestine

por Gerritsen, Jacoline, Hornung, Bastian, Renckens, Bernadette, van Hijum, Sacha A.F.T., Martins dos Santos, Vitor A.P., Rijkers, Ger T., Schaap, Peter J., de Vos, Willem M., Smidt, Hauke
Publicado 2017

A generally applicable validation scheme for the assessment of factors involved in reproducibility and quality of DNA-microarray data

por van Hijum, Sacha AFT, de Jong, Anne, Baerends, Richard JS, Karsens, Harma A, Kramer, Naomi E, Larsen, Rasmus, den Hengst, Chris D, Albers, Casper J, Kok, Jan, Kuipers, Oscar P
Publicado 2005

Microbiome dynamics of human epidermis following skin barrier disruption

por Zeeuwen, Patrick LJM, Boekhorst, Jos, van den Bogaard, Ellen H, de Koning, Heleen D, van de Kerkhof, Peter MC, Saulnier, Delphine M, van Swam, Iris I, van Hijum, Sacha AFT, Kleerebezem, Michiel, Schalkwijk, Joost, Timmerman, Harro M
Publicado 2012

From microbial gene essentiality to novel antimicrobial drug targets

por Mobegi, Fredrick M, van Hijum, Sacha AFT, Burghout, Peter, Bootsma, Hester J, de Vries, Stefan PW, Jongh, Christa E van der Gaast-de, Simonetti, Elles, Langereis, Jeroen D, Hermans, Peter WM, de Jonge, Marien I, Zomer, Aldert
Publicado 2014

The adult nasopharyngeal microbiome as a determinant of pneumococcal acquisition

por Cremers, Amelieke JH, Zomer, Aldert L, Gritzfeld, Jenna F, Ferwerda, Gerben, van Hijum, Sacha AFT, Ferreira, Daniela M, Shak, Joshua R, Klugman, Keith P, Boekhorst, Jos, Timmerman, Harro M, de Jonge, Marien I, Gordon, Stephen B, Hermans, Peter WM
Publicado 2014

FACIL: Fast and Accurate Genetic Code Inference and Logo

por Dutilh, Bas E., Jurgelenaite, Rasa, Szklarczyk, Radek, van Hijum, Sacha A.F.T., Harhangi, Harry R., Schmid, Markus, de Wild, Bart, Françoijs, Kees−Jan, Stunnenberg, Hendrik G., Strous, Marc, Jetten, Mike S.M., Op den Camp, Huub J.M., Huynen, Martijn A.
Publicado 2011