Comprehensive Large-Scale Integrative Analysis of Omics Data To Accelerate Specialized Metabolite Discovery

por Louwen, Joris J. R., van der Hooft, Justin J. J.
Publicado 2021

Enhanced correlation-based linking of biosynthetic gene clusters to their metabolic products through chemical class matching

por Louwen, Joris J. R., Medema, Marnix H., van der Hooft, Justin J. J.
Publicado 2023

Metabolomics-Guided Elucidation of Plant Abiotic Stress Responses in the 4IR Era: An Overview

por Tinte, Morena M., Chele, Kekeletso H., van der Hooft, Justin J. J., Tugizimana, Fidele
Publicado 2021

MS2DeepScore: a novel deep learning similarity measure to compare tandem mass spectra

por Huber, Florian, van der Burg, Sven, van der Hooft, Justin J. J., Ridder, Lars
Publicado 2021

Enhanced Acylcarnitine Annotation in High-Resolution Mass Spectrometry Data: Fragmentation Analysis for the Classification and Annotation of Acylcarnitines

por van der Hooft, Justin J. J., Ridder, Lars, Barrett, Michael P., Burgess, Karl E. V.
Publicado 2015

Urinary antihypertensive drug metabolite screening using molecular networking coupled to high-resolution mass spectrometry fragmentation

por van der Hooft, Justin J. J., Padmanabhan, Sandosh, Burgess, Karl E. V., Barrett, Michael P.
Publicado 2016

BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters

por Kautsar, Satria A, van der Hooft, Justin J J, de Ridder, Dick, Medema, Marnix H
Publicado 2021

In Silico Optimization of Mass Spectrometry Fragmentation Strategies in Metabolomics

por Wandy, Joe, Davies, Vinny, van der Hooft, Justin J. J., Weidt, Stefan, Daly, Rónán, Rogers, Simon
Publicado 2019

Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry

por Wandy, Joe, Zhu, Yunfeng, van der Hooft, Justin J J, Daly, Rónán, Barrett, Michael P, Rogers, Simon
Publicado 2018

Integrative omics approaches for biosynthetic pathway discovery in plants

por Singh, Kumar Saurabh, van der Hooft, Justin J. J., van Wees, Saskia C. M., Medema, Marnix H.
Publicado 2022

Combining Feature-Based Molecular Networking and Contextual Mass Spectral Libraries to Decipher Nutrimetabolomics Profiles

por Renai, Lapo, Ulaszewska, Marynka, Mattivi, Fulvio, Bartoletti, Riccardo, Del Bubba, Massimo, van der Hooft, Justin J. J.
Publicado 2022

Rapid Development of Improved Data-Dependent Acquisition Strategies

por Davies, Vinny, Wandy, Joe, Weidt, Stefan, van der Hooft, Justin J. J., Miller, Alice, Daly, Rónán, Rogers, Simon
Publicado 2021

Mass Spectral Molecular Networking to Profile the Metabolome of Biostimulant Bacillus Strains

por Nephali, Lerato, Steenkamp, Paul, Burgess, Karl, Huyser, Johan, Brand, Margaretha, van der Hooft, Justin J. J., Tugizimana, Fidele
Publicado 2022

Computational Metabolomics Tools Reveal Metabolic Reconfigurations Underlying the Effects of Biostimulant Seaweed Extracts on Maize Plants under Drought Stress Conditions

por Tinte, Morena M., Masike, Keabetswe, Steenkamp, Paul A., Huyser, Johan, van der Hooft, Justin J. J., Tugizimana, Fidele
Publicado 2022

Substantial Extracellular Metabolic Differences Found Between Phylogenetically Closely Related Probiotic and Pathogenic Strains of Escherichia coli

por van der Hooft, Justin J. J., Goldstone, Robert J., Harris, Susan, Burgess, Karl E. V., Smith, David G. E.
Publicado 2019

Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships

por Huber, Florian, Ridder, Lars, Verhoeven, Stefan, Spaaks, Jurriaan H., Diblen, Faruk, Rogers, Simon, van der Hooft, Justin J. J.
Publicado 2021

Ranking Metabolite Sets by Their Activity Levels

por McLuskey, Karen, Wandy, Joe, Vincent, Isabel, van der Hooft, Justin J. J., Rogers, Simon, Burgess, Karl, Daly, Rónán
Publicado 2021

Advances in decomposing complex metabolite mixtures using substructure- and network-based computational metabolomics approaches

por Beniddir, Mehdi A., Kang, Kyo Bin, Genta-Jouve, Grégory, Huber, Florian, Rogers, Simon, van der Hooft, Justin J. J.
Publicado 2021

An Isotopic Labeling Approach Linking Natural Products with Biosynthetic Gene Clusters

por McCaughey, Catherine S., van Santen, Jeffrey A., van der Hooft, Justin J. J., Medema, Marnix H., Linington, Roger G.
Publicado 2022

iPRESTO: Automated discovery of biosynthetic sub-clusters linked to specific natural product substructures

por Louwen, Joris J. R., Kautsar, Satria A., van der Burg, Sven, Medema, Marnix H., van der Hooft, Justin J. J.
Publicado 2023