Inferring phylogenies

Detalles Bibliográficos
Autor principal: Felsenstein, Joseph
Formato: Libro
Lenguaje:English
Publicado: Sunderland, Mass. : Sinauer Associates, c2004.
Materias:
Análisis cladístico > Matemáticas.
Tabla de Contenidos:
  • Parsimony methods
  • Counting evolutionary changes
  • How many trees are there?
  • Finding the best tree by heuristic search
  • Finding the best tree by branch and bound
  • Ancestral states and branch lengths
  • Variants of parsimony
  • Compatibility
  • Statistical properties of parsimony
  • A digression on history and philosophy
  • Distance matrix methods
  • Quartets of species
  • Models of DNA evolution
  • Models of protein evolution
  • Restriction sites, RAPDs, AFLPSs, and microsatellites
  • Likelihood methods
  • Hadamard methods
  • Bayesian inference of phylogenies
  • Testing models, trees and clocks
  • Bootstrap, jackknife, and permutation tests
  • Paired-sites tests
  • Invariants
  • Brownian motion and gene frequencies
  • Quantitative characters
  • Comparative methods
  • Coalescent trees
  • Likelihood calculations on coalescents
  • Coalescents and species trees
  • Alignment, gene families, and genomics
  • Consensus trees and distances between trees
  • Biogeography, hosts, and parasites
  • Phylogenies and paleontology
  • Tests based on tree shape
  • Drawing trees
  • Phylogeny software.

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