The phylogenetic handbook : a practical approach to phylogenetic analysis and hypothesis testing /

Detalles Bibliográficos
Otros Autores: Lemey, Philippe, Salemi, Marco, 1968-, Vandamme, Anne-Mieke, 1960-
Formato: Libro
Lenguaje:English
Publicado: Cambridge ; New York : Cambridge University Press, 2009.
Edición:Second edition.
Materias:
ADN > Análisis > Manuales.
Proteínas > Análisis > Manuales.
Evolución molecular > Procesamiento de datos.
Filogenia.
Tabla de Contenidos:
  • Section 1 Introduction : Basic concepts of molecular evolution / Anne-Mieke Vandamme
  • Section II Data preparation : Sequence databases and database searching : Theory / Guy Bottu
  • Practice / Marc Van Ranst, Philippe Lemey
  • Multiple sequence alignment : Theory / Des Higgins, Philippe Lemey
  • Practice / Des Higgins, Philippe Lemey
  • Section III Phylogenetic inference : Genetic distances and nucleotide substitution models : Theory / Korbinian Strimmer, Arndt von Haeseler
  • Practice / Marco Salemi
  • Phylogenetic inference based on distance methods : Theory / Yves Van de Peer
  • Practice / Marco Salemi
  • Phylogenetic inference using maximum likelihood methods : Theory / Heiko A. Schmidt, Arndt von Haesler
  • Practice / Heiko A. Schmidt, Arndt von Haeseler
  • Bayesian phylogenetic analysis using MrBayes : Theory / Fredrik Ronquist, Paul van der Mark, John P. Huelsenbeck
  • Practice / Fredrik Ronquist, Paul van der Mark, John P. Huelsenbeck
  • Phylogeny inference based on parsimony and other methods using PAUP* : Theory / David L. Swofford, Jack Sullivan
  • Practice / David L. Swofford, Jack Sullivan
  • Phylogenetic analysis using protein sequences : Theory / Fred R. Opperdoes
  • Practices / Fred R. Opperdoes, Philippe Lemey
  • Section IV Testing models and trees : Theory / David Posada
  • Practice / David Posada
  • Molecular clock analysis : Theory / Philippe Lemey, David Posada
  • Practice / Philippe Lemey, David Posada
  • Testing tree topologies : Theory / Heiko A. Schmidt
  • Practice / Heiko A. Schmidt
  • Section V Molecular adaptation : Natural selection and adaptation of molecular sequences / Oliver G. Pybus, Beth Shapiro
  • Estimating selection pressures on alignments of coding sequences : Theory / Sergei L. Kosakovsky Pond, Art F.Y. Poon, Simon D.W. Frost
  • Practice / Sergei L. Kosakovsky Pond, Art F.Y. Poon, Simon D.W. Frost
  • Section VI Recombination : Introduction to recombination detection / Philippe Lemey, David Posada
  • Detecting and characterizing individual recombination events : Theory / Mika Salminen, Darren Martin
  • Practice / Mika Salminen, Darren Martin
  • Section VII Population genetics : The coalescent : population genetic inference using genealogies / Allen Rodrigo
  • Bayesian evolutionary analysis by sampling trees : Theory / Alexei J. Drummond, Andrew Rambaut
  • Practice / Alexei J. Drummond, Andrew Rambaut
  • Lamarc : estimating population genetic parameters from molecular data : Theory / Mary K. Kuhner
  • Practice / Mary K. Kuhner
  • Section VIII Additional topics : Assessing substitution saturation with Dambe : Theory / Xuhua Xia
  • Practice / Xuhua Xia, Philippe Lemey
  • Split networks. A tool for exploring complex evolutionary relationships in molecular data : Theory / Vincent Moulton, Katharina T. Huber
  • Practice / Vincent Moulton, Katharina T. Huber.

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