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Dynamic Partitioning of GATE Monte-Carlo Simulations on EGEE

The EGEE Grid offers the necessary infrastructure and resources for reducing the running time of particle tracking Monte-Carlo applications like GATE. However, efforts are required to achieve reliable and efficient execution and to provide execution frameworks to end-users. This paper presents resul...

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Autores principales: Camarasu-Pop, S, Moscicki, Jakub T, Benoit-Cattin, Hugues, Glatard, Tristan, Sarrut, David, Camarasu-Pop, Sorina
Lenguaje:eng
Publicado: 2010
Materias:
Acceso en línea:https://dx.doi.org/10.1007/s10723-010-9153-0
http://cds.cern.ch/record/1359358
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author Camarasu-Pop, S
Moscicki, Jakub T
Benoit-Cattin, Hugues
Glatard, Tristan
Sarrut, David
Camarasu-Pop, Sorina
author_facet Camarasu-Pop, S
Moscicki, Jakub T
Benoit-Cattin, Hugues
Glatard, Tristan
Sarrut, David
Camarasu-Pop, Sorina
author_sort Camarasu-Pop, S
collection CERN
description The EGEE Grid offers the necessary infrastructure and resources for reducing the running time of particle tracking Monte-Carlo applications like GATE. However, efforts are required to achieve reliable and efficient execution and to provide execution frameworks to end-users. This paper presents results obtained with porting the GATE software on the EGEE Grid, our ultimate goal being to provide reliable, user-friendly and fast execution of GATE to radiation therapy researchers. To address these requirements, we propose a new parallelization scheme based on a dynamic partitioning and its implementation in two different frameworks using pilot jobs and workflows. Results show that pilot jobs bring strong improvement w.r.t. regular gLite submission, that the proposed dynamic partitioning algorithm further reduces execution time by a factor of two and that the genericity and user-friendliness offered by the workflow implementation do not introduce significant overhead.
id cern-1359358
institution Organización Europea para la Investigación Nuclear
language eng
publishDate 2010
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spelling cern-13593582019-09-30T06:29:59Zdoi:10.1007/s10723-010-9153-0http://cds.cern.ch/record/1359358engCamarasu-Pop, SMoscicki, Jakub TBenoit-Cattin, HuguesGlatard, TristanSarrut, DavidCamarasu-Pop, SorinaDynamic Partitioning of GATE Monte-Carlo Simulations on EGEEComputing and ComputersThe EGEE Grid offers the necessary infrastructure and resources for reducing the running time of particle tracking Monte-Carlo applications like GATE. However, efforts are required to achieve reliable and efficient execution and to provide execution frameworks to end-users. This paper presents results obtained with porting the GATE software on the EGEE Grid, our ultimate goal being to provide reliable, user-friendly and fast execution of GATE to radiation therapy researchers. To address these requirements, we propose a new parallelization scheme based on a dynamic partitioning and its implementation in two different frameworks using pilot jobs and workflows. Results show that pilot jobs bring strong improvement w.r.t. regular gLite submission, that the proposed dynamic partitioning algorithm further reduces execution time by a factor of two and that the genericity and user-friendliness offered by the workflow implementation do not introduce significant overhead.oai:cds.cern.ch:13593582010
spellingShingle Computing and Computers
Camarasu-Pop, S
Moscicki, Jakub T
Benoit-Cattin, Hugues
Glatard, Tristan
Sarrut, David
Camarasu-Pop, Sorina
Dynamic Partitioning of GATE Monte-Carlo Simulations on EGEE
title Dynamic Partitioning of GATE Monte-Carlo Simulations on EGEE
title_full Dynamic Partitioning of GATE Monte-Carlo Simulations on EGEE
title_fullStr Dynamic Partitioning of GATE Monte-Carlo Simulations on EGEE
title_full_unstemmed Dynamic Partitioning of GATE Monte-Carlo Simulations on EGEE
title_short Dynamic Partitioning of GATE Monte-Carlo Simulations on EGEE
title_sort dynamic partitioning of gate monte-carlo simulations on egee
topic Computing and Computers
url https://dx.doi.org/10.1007/s10723-010-9153-0
http://cds.cern.ch/record/1359358
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AT glatardtristan dynamicpartitioningofgatemontecarlosimulationsonegee
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