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Synthetic biology: engineering molecular computers

<!--HTML-->Complicated systems cannot survive the rigors of a chaotic environment, without balancing mechanisms that sense, decide upon and counteract the exerted disturbances. Especially so with living organisms, forced by competition to incredible complexities, escalating also their self-con...

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Autor principal: Samaras-Tsakiris, Konstantinos
Lenguaje:eng
Publicado: 2018
Materias:
Acceso en línea:http://cds.cern.ch/record/2314559
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author Samaras-Tsakiris, Konstantinos
author_facet Samaras-Tsakiris, Konstantinos
author_sort Samaras-Tsakiris, Konstantinos
collection CERN
description <!--HTML-->Complicated systems cannot survive the rigors of a chaotic environment, without balancing mechanisms that sense, decide upon and counteract the exerted disturbances. Especially so with living organisms, forced by competition to incredible complexities, escalating also their self-controlling plight. Therefore, they compute. Can we harness biological mechanisms to create artificial computing systems? Biology offers several levels of design abstraction: molecular machines, cells, organisms... ranging from the more easily-defined to the more inherently complex. At the bottom of this stack we find the nucleic acids, RNA and DNA, with their digital structure and relatively precise interactions. They are central enablers of designing artificial biological systems, in the confluence of engineering and biology, that we call Synthetic biology. In the first part, let us follow their trail towards an overview of building computing machines with molecules -- and in the second part, take the case study of iGEM Greece 2017, a student team which made an RNA computer to identify and selectively kill cancer cells. Links 1. [Y. Benenson, Biomolecular computing systems: principles, progress and potential, Nature Reviews Genetics (2012)](https://www.nature.com/articles/nrg3197) 2. [L. Adleman, Molecular Computation of Solutions to Combinatorial Problems, Science (1994)](https://grid.cs.gsu.edu/~wkim/index_files/hpp94.pdf) 3. [iGEM Greece 2017 project site](http://2017.igem.org/Team:Greece) 4. [Microsoft research: programming DNA](https://www.youtube.com/watch?v=sL2I8Fqu9HI)
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spelling cern-23145592022-11-02T22:13:44Zhttp://cds.cern.ch/record/2314559engSamaras-Tsakiris, KonstantinosSynthetic biology: engineering molecular computersSynthetic biology: engineering molecular computersIT Technical Forum (ITTF)<!--HTML-->Complicated systems cannot survive the rigors of a chaotic environment, without balancing mechanisms that sense, decide upon and counteract the exerted disturbances. Especially so with living organisms, forced by competition to incredible complexities, escalating also their self-controlling plight. Therefore, they compute. Can we harness biological mechanisms to create artificial computing systems? Biology offers several levels of design abstraction: molecular machines, cells, organisms... ranging from the more easily-defined to the more inherently complex. At the bottom of this stack we find the nucleic acids, RNA and DNA, with their digital structure and relatively precise interactions. They are central enablers of designing artificial biological systems, in the confluence of engineering and biology, that we call Synthetic biology. In the first part, let us follow their trail towards an overview of building computing machines with molecules -- and in the second part, take the case study of iGEM Greece 2017, a student team which made an RNA computer to identify and selectively kill cancer cells. Links 1. [Y. Benenson, Biomolecular computing systems: principles, progress and potential, Nature Reviews Genetics (2012)](https://www.nature.com/articles/nrg3197) 2. [L. Adleman, Molecular Computation of Solutions to Combinatorial Problems, Science (1994)](https://grid.cs.gsu.edu/~wkim/index_files/hpp94.pdf) 3. [iGEM Greece 2017 project site](http://2017.igem.org/Team:Greece) 4. [Microsoft research: programming DNA](https://www.youtube.com/watch?v=sL2I8Fqu9HI)oai:cds.cern.ch:23145592018
spellingShingle IT Technical Forum (ITTF)
Samaras-Tsakiris, Konstantinos
Synthetic biology: engineering molecular computers
title Synthetic biology: engineering molecular computers
title_full Synthetic biology: engineering molecular computers
title_fullStr Synthetic biology: engineering molecular computers
title_full_unstemmed Synthetic biology: engineering molecular computers
title_short Synthetic biology: engineering molecular computers
title_sort synthetic biology: engineering molecular computers
topic IT Technical Forum (ITTF)
url http://cds.cern.ch/record/2314559
work_keys_str_mv AT samarastsakiriskonstantinos syntheticbiologyengineeringmolecularcomputers