Cargando…
Interactive image segmentation of MARS datasets using bag of features
In this paper, we propose a slice-based interactive segmentation of spectral CT datasets using a bag of features method. The data is acquired from a MARS scanner which divides up the x-ray spectrum into multiple energy bins for imaging. In literature, most existing segmentation methods are limited t...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Lenguaje: | eng |
Publicado: |
2021
|
Acceso en línea: | https://dx.doi.org/10.1109/trpms.2020.3030045 http://cds.cern.ch/record/2772242 |
_version_ | 1780971506904334336 |
---|---|
author | Kanithi, Praveenkumar de Ruiter, Niels J A Amma, Maya R Lindeman, Robert W Butler, Anthony P H Butler, Philip H Chernoglazov, Alexander I Mandalika, V B H Adebileje, Sikiru A Alexander, Steven D Anjomrouz, Marzieh Asghariomabad, Fatemeh Atharifard, Ali Atlas, James Bamford, Benjamin Bell, Stephen T Bheesette, Srinidhi Carbonez, Pierre Chambers, Claire Clark, Jennifer A Colgan, Frances Crighton, Jonathan S Dahal, Shishir Damet, Jerome Doesburg, Robert M N Duncan, Neryda Ghodsian, Nooshin Gieseg, Steven P Goulter, Brian P Gurney, Sam Healy, Joseph L Kirkbride, Tracy Lansley, Stuart P Lowe, Chiara Marfo, Emmanuel Matanaghi, Aysouda Moghiseh, Mahdieh Palmer, David Panta, Raj K Prebble, Hannah M Raja, Aamir Y Renaud, Peter Sayous, Yann Schleich, Nanette Searle, Emily Sheeja, Jereena S Uddin, Rayhan Vanden Broeke, Lieza Vivek, V S Walker, E Peter Walsh, Michael F Wijesooriya, Manoj Younger, W Ross |
author_facet | Kanithi, Praveenkumar de Ruiter, Niels J A Amma, Maya R Lindeman, Robert W Butler, Anthony P H Butler, Philip H Chernoglazov, Alexander I Mandalika, V B H Adebileje, Sikiru A Alexander, Steven D Anjomrouz, Marzieh Asghariomabad, Fatemeh Atharifard, Ali Atlas, James Bamford, Benjamin Bell, Stephen T Bheesette, Srinidhi Carbonez, Pierre Chambers, Claire Clark, Jennifer A Colgan, Frances Crighton, Jonathan S Dahal, Shishir Damet, Jerome Doesburg, Robert M N Duncan, Neryda Ghodsian, Nooshin Gieseg, Steven P Goulter, Brian P Gurney, Sam Healy, Joseph L Kirkbride, Tracy Lansley, Stuart P Lowe, Chiara Marfo, Emmanuel Matanaghi, Aysouda Moghiseh, Mahdieh Palmer, David Panta, Raj K Prebble, Hannah M Raja, Aamir Y Renaud, Peter Sayous, Yann Schleich, Nanette Searle, Emily Sheeja, Jereena S Uddin, Rayhan Vanden Broeke, Lieza Vivek, V S Walker, E Peter Walsh, Michael F Wijesooriya, Manoj Younger, W Ross |
author_sort | Kanithi, Praveenkumar |
collection | CERN |
description | In this paper, we propose a slice-based interactive segmentation of spectral CT datasets using a bag of features method. The data is acquired from a MARS scanner which divides up the x-ray spectrum into multiple energy bins for imaging. In literature, most existing segmentation methods are limited to performing a specific task or tied to a particular imaging modality. Therefore, when applying generalized methods to MARS datasets, the additional energy information acquired from the scanner cannot be sufficiently utilized. We describe a new approach that circumvents this problem by effectively aggregating the data from multiple channels. Our method solves a classification problem to get the solution for segmentation. Starting with a set of labelled pixels, we partition the data using superpixels. Then, a set of local descriptors, extracted from each superpixel, are encoded into a code-book and pooled together to create a global superpixel level descriptor (bag of features representation). We propose to use the vector of locally aggregated descriptors as our encoding/pooling strategy, as it is efficient to compute and leads to good results with simple linear classifiers. A linear-Support Vector Machine is then used to classify the superpixels into different labels. The proposed method was evaluated on multiple MARS datasets. Experimental results show that our method achieved an average of more than 10% increase in the accuracy over other state-of-the-art methods. |
id | oai-inspirehep.net-1850504 |
institution | Organización Europea para la Investigación Nuclear |
language | eng |
publishDate | 2021 |
record_format | invenio |
spelling | oai-inspirehep.net-18505042022-04-13T13:22:00Zdoi:10.1109/trpms.2020.3030045http://cds.cern.ch/record/2772242engKanithi, Praveenkumarde Ruiter, Niels J AAmma, Maya RLindeman, Robert WButler, Anthony P HButler, Philip HChernoglazov, Alexander IMandalika, V B HAdebileje, Sikiru AAlexander, Steven DAnjomrouz, MarziehAsghariomabad, FatemehAtharifard, AliAtlas, JamesBamford, BenjaminBell, Stephen TBheesette, SrinidhiCarbonez, PierreChambers, ClaireClark, Jennifer AColgan, FrancesCrighton, Jonathan SDahal, ShishirDamet, JeromeDoesburg, Robert M NDuncan, NerydaGhodsian, NooshinGieseg, Steven PGoulter, Brian PGurney, SamHealy, Joseph LKirkbride, TracyLansley, Stuart PLowe, ChiaraMarfo, EmmanuelMatanaghi, AysoudaMoghiseh, MahdiehPalmer, DavidPanta, Raj KPrebble, Hannah MRaja, Aamir YRenaud, PeterSayous, YannSchleich, NanetteSearle, EmilySheeja, Jereena SUddin, RayhanVanden Broeke, LiezaVivek, V SWalker, E PeterWalsh, Michael FWijesooriya, ManojYounger, W RossInteractive image segmentation of MARS datasets using bag of featuresIn this paper, we propose a slice-based interactive segmentation of spectral CT datasets using a bag of features method. The data is acquired from a MARS scanner which divides up the x-ray spectrum into multiple energy bins for imaging. In literature, most existing segmentation methods are limited to performing a specific task or tied to a particular imaging modality. Therefore, when applying generalized methods to MARS datasets, the additional energy information acquired from the scanner cannot be sufficiently utilized. We describe a new approach that circumvents this problem by effectively aggregating the data from multiple channels. Our method solves a classification problem to get the solution for segmentation. Starting with a set of labelled pixels, we partition the data using superpixels. Then, a set of local descriptors, extracted from each superpixel, are encoded into a code-book and pooled together to create a global superpixel level descriptor (bag of features representation). We propose to use the vector of locally aggregated descriptors as our encoding/pooling strategy, as it is efficient to compute and leads to good results with simple linear classifiers. A linear-Support Vector Machine is then used to classify the superpixels into different labels. The proposed method was evaluated on multiple MARS datasets. Experimental results show that our method achieved an average of more than 10% increase in the accuracy over other state-of-the-art methods.oai:inspirehep.net:18505042021 |
spellingShingle | Kanithi, Praveenkumar de Ruiter, Niels J A Amma, Maya R Lindeman, Robert W Butler, Anthony P H Butler, Philip H Chernoglazov, Alexander I Mandalika, V B H Adebileje, Sikiru A Alexander, Steven D Anjomrouz, Marzieh Asghariomabad, Fatemeh Atharifard, Ali Atlas, James Bamford, Benjamin Bell, Stephen T Bheesette, Srinidhi Carbonez, Pierre Chambers, Claire Clark, Jennifer A Colgan, Frances Crighton, Jonathan S Dahal, Shishir Damet, Jerome Doesburg, Robert M N Duncan, Neryda Ghodsian, Nooshin Gieseg, Steven P Goulter, Brian P Gurney, Sam Healy, Joseph L Kirkbride, Tracy Lansley, Stuart P Lowe, Chiara Marfo, Emmanuel Matanaghi, Aysouda Moghiseh, Mahdieh Palmer, David Panta, Raj K Prebble, Hannah M Raja, Aamir Y Renaud, Peter Sayous, Yann Schleich, Nanette Searle, Emily Sheeja, Jereena S Uddin, Rayhan Vanden Broeke, Lieza Vivek, V S Walker, E Peter Walsh, Michael F Wijesooriya, Manoj Younger, W Ross Interactive image segmentation of MARS datasets using bag of features |
title | Interactive image segmentation of MARS datasets using bag of features |
title_full | Interactive image segmentation of MARS datasets using bag of features |
title_fullStr | Interactive image segmentation of MARS datasets using bag of features |
title_full_unstemmed | Interactive image segmentation of MARS datasets using bag of features |
title_short | Interactive image segmentation of MARS datasets using bag of features |
title_sort | interactive image segmentation of mars datasets using bag of features |
url | https://dx.doi.org/10.1109/trpms.2020.3030045 http://cds.cern.ch/record/2772242 |
work_keys_str_mv | AT kanithipraveenkumar interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT deruiternielsja interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT ammamayar interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT lindemanrobertw interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT butleranthonyph interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT butlerphiliph interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT chernoglazovalexanderi interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT mandalikavbh interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT adebilejesikirua interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT alexanderstevend interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT anjomrouzmarzieh interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT asghariomabadfatemeh interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT atharifardali interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT atlasjames interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT bamfordbenjamin interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT bellstephent interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT bheesettesrinidhi interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT carbonezpierre interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT chambersclaire interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT clarkjennifera interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT colganfrances interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT crightonjonathans interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT dahalshishir interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT dametjerome interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT doesburgrobertmn interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT duncanneryda interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT ghodsiannooshin interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT giesegstevenp interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT goulterbrianp interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT gurneysam interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT healyjosephl interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT kirkbridetracy interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT lansleystuartp interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT lowechiara interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT marfoemmanuel interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT matanaghiaysouda interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT moghisehmahdieh interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT palmerdavid interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT pantarajk interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT prebblehannahm interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT rajaaamiry interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT renaudpeter interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT sayousyann interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT schleichnanette interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT searleemily interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT sheejajereenas interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT uddinrayhan interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT vandenbroekelieza interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT vivekvs interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT walkerepeter interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT walshmichaelf interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT wijesooriyamanoj interactiveimagesegmentationofmarsdatasetsusingbagoffeatures AT youngerwross interactiveimagesegmentationofmarsdatasetsusingbagoffeatures |