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Interactive image segmentation of MARS datasets using bag of features

In this paper, we propose a slice-based interactive segmentation of spectral CT datasets using a bag of features method. The data is acquired from a MARS scanner which divides up the x-ray spectrum into multiple energy bins for imaging. In literature, most existing segmentation methods are limited t...

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Autores principales: Kanithi, Praveenkumar, de Ruiter, Niels J A, Amma, Maya R, Lindeman, Robert W, Butler, Anthony P H, Butler, Philip H, Chernoglazov, Alexander I, Mandalika, V B H, Adebileje, Sikiru A, Alexander, Steven D, Anjomrouz, Marzieh, Asghariomabad, Fatemeh, Atharifard, Ali, Atlas, James, Bamford, Benjamin, Bell, Stephen T, Bheesette, Srinidhi, Carbonez, Pierre, Chambers, Claire, Clark, Jennifer A, Colgan, Frances, Crighton, Jonathan S, Dahal, Shishir, Damet, Jerome, Doesburg, Robert M N, Duncan, Neryda, Ghodsian, Nooshin, Gieseg, Steven P, Goulter, Brian P, Gurney, Sam, Healy, Joseph L, Kirkbride, Tracy, Lansley, Stuart P, Lowe, Chiara, Marfo, Emmanuel, Matanaghi, Aysouda, Moghiseh, Mahdieh, Palmer, David, Panta, Raj K, Prebble, Hannah M, Raja, Aamir Y, Renaud, Peter, Sayous, Yann, Schleich, Nanette, Searle, Emily, Sheeja, Jereena S, Uddin, Rayhan, Vanden Broeke, Lieza, Vivek, V S, Walker, E Peter, Walsh, Michael F, Wijesooriya, Manoj, Younger, W Ross
Lenguaje:eng
Publicado: 2021
Acceso en línea:https://dx.doi.org/10.1109/trpms.2020.3030045
http://cds.cern.ch/record/2772242
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author Kanithi, Praveenkumar
de Ruiter, Niels J A
Amma, Maya R
Lindeman, Robert W
Butler, Anthony P H
Butler, Philip H
Chernoglazov, Alexander I
Mandalika, V B H
Adebileje, Sikiru A
Alexander, Steven D
Anjomrouz, Marzieh
Asghariomabad, Fatemeh
Atharifard, Ali
Atlas, James
Bamford, Benjamin
Bell, Stephen T
Bheesette, Srinidhi
Carbonez, Pierre
Chambers, Claire
Clark, Jennifer A
Colgan, Frances
Crighton, Jonathan S
Dahal, Shishir
Damet, Jerome
Doesburg, Robert M N
Duncan, Neryda
Ghodsian, Nooshin
Gieseg, Steven P
Goulter, Brian P
Gurney, Sam
Healy, Joseph L
Kirkbride, Tracy
Lansley, Stuart P
Lowe, Chiara
Marfo, Emmanuel
Matanaghi, Aysouda
Moghiseh, Mahdieh
Palmer, David
Panta, Raj K
Prebble, Hannah M
Raja, Aamir Y
Renaud, Peter
Sayous, Yann
Schleich, Nanette
Searle, Emily
Sheeja, Jereena S
Uddin, Rayhan
Vanden Broeke, Lieza
Vivek, V S
Walker, E Peter
Walsh, Michael F
Wijesooriya, Manoj
Younger, W Ross
author_facet Kanithi, Praveenkumar
de Ruiter, Niels J A
Amma, Maya R
Lindeman, Robert W
Butler, Anthony P H
Butler, Philip H
Chernoglazov, Alexander I
Mandalika, V B H
Adebileje, Sikiru A
Alexander, Steven D
Anjomrouz, Marzieh
Asghariomabad, Fatemeh
Atharifard, Ali
Atlas, James
Bamford, Benjamin
Bell, Stephen T
Bheesette, Srinidhi
Carbonez, Pierre
Chambers, Claire
Clark, Jennifer A
Colgan, Frances
Crighton, Jonathan S
Dahal, Shishir
Damet, Jerome
Doesburg, Robert M N
Duncan, Neryda
Ghodsian, Nooshin
Gieseg, Steven P
Goulter, Brian P
Gurney, Sam
Healy, Joseph L
Kirkbride, Tracy
Lansley, Stuart P
Lowe, Chiara
Marfo, Emmanuel
Matanaghi, Aysouda
Moghiseh, Mahdieh
Palmer, David
Panta, Raj K
Prebble, Hannah M
Raja, Aamir Y
Renaud, Peter
Sayous, Yann
Schleich, Nanette
Searle, Emily
Sheeja, Jereena S
Uddin, Rayhan
Vanden Broeke, Lieza
Vivek, V S
Walker, E Peter
Walsh, Michael F
Wijesooriya, Manoj
Younger, W Ross
author_sort Kanithi, Praveenkumar
collection CERN
description In this paper, we propose a slice-based interactive segmentation of spectral CT datasets using a bag of features method. The data is acquired from a MARS scanner which divides up the x-ray spectrum into multiple energy bins for imaging. In literature, most existing segmentation methods are limited to performing a specific task or tied to a particular imaging modality. Therefore, when applying generalized methods to MARS datasets, the additional energy information acquired from the scanner cannot be sufficiently utilized. We describe a new approach that circumvents this problem by effectively aggregating the data from multiple channels. Our method solves a classification problem to get the solution for segmentation. Starting with a set of labelled pixels, we partition the data using superpixels. Then, a set of local descriptors, extracted from each superpixel, are encoded into a code-book and pooled together to create a global superpixel level descriptor (bag of features representation). We propose to use the vector of locally aggregated descriptors as our encoding/pooling strategy, as it is efficient to compute and leads to good results with simple linear classifiers. A linear-Support Vector Machine is then used to classify the superpixels into different labels. The proposed method was evaluated on multiple MARS datasets. Experimental results show that our method achieved an average of more than 10% increase in the accuracy over other state-of-the-art methods.
id oai-inspirehep.net-1850504
institution Organización Europea para la Investigación Nuclear
language eng
publishDate 2021
record_format invenio
spelling oai-inspirehep.net-18505042022-04-13T13:22:00Zdoi:10.1109/trpms.2020.3030045http://cds.cern.ch/record/2772242engKanithi, Praveenkumarde Ruiter, Niels J AAmma, Maya RLindeman, Robert WButler, Anthony P HButler, Philip HChernoglazov, Alexander IMandalika, V B HAdebileje, Sikiru AAlexander, Steven DAnjomrouz, MarziehAsghariomabad, FatemehAtharifard, AliAtlas, JamesBamford, BenjaminBell, Stephen TBheesette, SrinidhiCarbonez, PierreChambers, ClaireClark, Jennifer AColgan, FrancesCrighton, Jonathan SDahal, ShishirDamet, JeromeDoesburg, Robert M NDuncan, NerydaGhodsian, NooshinGieseg, Steven PGoulter, Brian PGurney, SamHealy, Joseph LKirkbride, TracyLansley, Stuart PLowe, ChiaraMarfo, EmmanuelMatanaghi, AysoudaMoghiseh, MahdiehPalmer, DavidPanta, Raj KPrebble, Hannah MRaja, Aamir YRenaud, PeterSayous, YannSchleich, NanetteSearle, EmilySheeja, Jereena SUddin, RayhanVanden Broeke, LiezaVivek, V SWalker, E PeterWalsh, Michael FWijesooriya, ManojYounger, W RossInteractive image segmentation of MARS datasets using bag of featuresIn this paper, we propose a slice-based interactive segmentation of spectral CT datasets using a bag of features method. The data is acquired from a MARS scanner which divides up the x-ray spectrum into multiple energy bins for imaging. In literature, most existing segmentation methods are limited to performing a specific task or tied to a particular imaging modality. Therefore, when applying generalized methods to MARS datasets, the additional energy information acquired from the scanner cannot be sufficiently utilized. We describe a new approach that circumvents this problem by effectively aggregating the data from multiple channels. Our method solves a classification problem to get the solution for segmentation. Starting with a set of labelled pixels, we partition the data using superpixels. Then, a set of local descriptors, extracted from each superpixel, are encoded into a code-book and pooled together to create a global superpixel level descriptor (bag of features representation). We propose to use the vector of locally aggregated descriptors as our encoding/pooling strategy, as it is efficient to compute and leads to good results with simple linear classifiers. A linear-Support Vector Machine is then used to classify the superpixels into different labels. The proposed method was evaluated on multiple MARS datasets. Experimental results show that our method achieved an average of more than 10% increase in the accuracy over other state-of-the-art methods.oai:inspirehep.net:18505042021
spellingShingle Kanithi, Praveenkumar
de Ruiter, Niels J A
Amma, Maya R
Lindeman, Robert W
Butler, Anthony P H
Butler, Philip H
Chernoglazov, Alexander I
Mandalika, V B H
Adebileje, Sikiru A
Alexander, Steven D
Anjomrouz, Marzieh
Asghariomabad, Fatemeh
Atharifard, Ali
Atlas, James
Bamford, Benjamin
Bell, Stephen T
Bheesette, Srinidhi
Carbonez, Pierre
Chambers, Claire
Clark, Jennifer A
Colgan, Frances
Crighton, Jonathan S
Dahal, Shishir
Damet, Jerome
Doesburg, Robert M N
Duncan, Neryda
Ghodsian, Nooshin
Gieseg, Steven P
Goulter, Brian P
Gurney, Sam
Healy, Joseph L
Kirkbride, Tracy
Lansley, Stuart P
Lowe, Chiara
Marfo, Emmanuel
Matanaghi, Aysouda
Moghiseh, Mahdieh
Palmer, David
Panta, Raj K
Prebble, Hannah M
Raja, Aamir Y
Renaud, Peter
Sayous, Yann
Schleich, Nanette
Searle, Emily
Sheeja, Jereena S
Uddin, Rayhan
Vanden Broeke, Lieza
Vivek, V S
Walker, E Peter
Walsh, Michael F
Wijesooriya, Manoj
Younger, W Ross
Interactive image segmentation of MARS datasets using bag of features
title Interactive image segmentation of MARS datasets using bag of features
title_full Interactive image segmentation of MARS datasets using bag of features
title_fullStr Interactive image segmentation of MARS datasets using bag of features
title_full_unstemmed Interactive image segmentation of MARS datasets using bag of features
title_short Interactive image segmentation of MARS datasets using bag of features
title_sort interactive image segmentation of mars datasets using bag of features
url https://dx.doi.org/10.1109/trpms.2020.3030045
http://cds.cern.ch/record/2772242
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