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Assessing the prospect of XAFS experiments of metalloproteins under in vivo conditions at Indus-2 synchrotron facility, India

The feasibility of X-ray absorption fine-structure (XAFS) experiments of ultra-dilute metalloproteins under in vivo conditions (T = 300 K, pH = 7) at the BL-9 bending-magnet beamline (Indus-2) is reported, using as an example analogous synthetic Zn (0.1 mM) M1dr solution. The (Zn K-edge) XAFS of M1d...

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Autores principales: Lahiri, Debdutta, Agrawal, Richa, Chandravanshi, Khileshwari, Rajput, Parasmani, Agrawal, Ankur, Dwivedi, Ashutosh, Makde, Ravindra D., Jha, S. N., Garg, Nandini
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10000809/
https://www.ncbi.nlm.nih.gov/pubmed/36891859
http://dx.doi.org/10.1107/S1600577522011791
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author Lahiri, Debdutta
Agrawal, Richa
Chandravanshi, Khileshwari
Rajput, Parasmani
Agrawal, Ankur
Dwivedi, Ashutosh
Makde, Ravindra D.
Jha, S. N.
Garg, Nandini
author_facet Lahiri, Debdutta
Agrawal, Richa
Chandravanshi, Khileshwari
Rajput, Parasmani
Agrawal, Ankur
Dwivedi, Ashutosh
Makde, Ravindra D.
Jha, S. N.
Garg, Nandini
author_sort Lahiri, Debdutta
collection PubMed
description The feasibility of X-ray absorption fine-structure (XAFS) experiments of ultra-dilute metalloproteins under in vivo conditions (T = 300 K, pH = 7) at the BL-9 bending-magnet beamline (Indus-2) is reported, using as an example analogous synthetic Zn (0.1 mM) M1dr solution. The (Zn K-edge) XAFS of M1dr solution was measured with a four-element silicon drift detector. The first-shell fit was tested and found to be robust against statistical noise, generating reliable nearest-neighbor bond results. The results are found to be invariant between physiological and non-physiological conditions, which confirms the robust coordination chemistry of Zn with important biological implications. The scope of improving spectral quality for accommodation of higher-shell analysis is addressed.
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spelling pubmed-100008092023-03-11 Assessing the prospect of XAFS experiments of metalloproteins under in vivo conditions at Indus-2 synchrotron facility, India Lahiri, Debdutta Agrawal, Richa Chandravanshi, Khileshwari Rajput, Parasmani Agrawal, Ankur Dwivedi, Ashutosh Makde, Ravindra D. Jha, S. N. Garg, Nandini J Synchrotron Radiat Beamlines The feasibility of X-ray absorption fine-structure (XAFS) experiments of ultra-dilute metalloproteins under in vivo conditions (T = 300 K, pH = 7) at the BL-9 bending-magnet beamline (Indus-2) is reported, using as an example analogous synthetic Zn (0.1 mM) M1dr solution. The (Zn K-edge) XAFS of M1dr solution was measured with a four-element silicon drift detector. The first-shell fit was tested and found to be robust against statistical noise, generating reliable nearest-neighbor bond results. The results are found to be invariant between physiological and non-physiological conditions, which confirms the robust coordination chemistry of Zn with important biological implications. The scope of improving spectral quality for accommodation of higher-shell analysis is addressed. International Union of Crystallography 2023-01-13 /pmc/articles/PMC10000809/ /pubmed/36891859 http://dx.doi.org/10.1107/S1600577522011791 Text en © Debdutta Lahiri et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Beamlines
Lahiri, Debdutta
Agrawal, Richa
Chandravanshi, Khileshwari
Rajput, Parasmani
Agrawal, Ankur
Dwivedi, Ashutosh
Makde, Ravindra D.
Jha, S. N.
Garg, Nandini
Assessing the prospect of XAFS experiments of metalloproteins under in vivo conditions at Indus-2 synchrotron facility, India
title Assessing the prospect of XAFS experiments of metalloproteins under in vivo conditions at Indus-2 synchrotron facility, India
title_full Assessing the prospect of XAFS experiments of metalloproteins under in vivo conditions at Indus-2 synchrotron facility, India
title_fullStr Assessing the prospect of XAFS experiments of metalloproteins under in vivo conditions at Indus-2 synchrotron facility, India
title_full_unstemmed Assessing the prospect of XAFS experiments of metalloproteins under in vivo conditions at Indus-2 synchrotron facility, India
title_short Assessing the prospect of XAFS experiments of metalloproteins under in vivo conditions at Indus-2 synchrotron facility, India
title_sort assessing the prospect of xafs experiments of metalloproteins under in vivo conditions at indus-2 synchrotron facility, india
topic Beamlines
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10000809/
https://www.ncbi.nlm.nih.gov/pubmed/36891859
http://dx.doi.org/10.1107/S1600577522011791
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