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Efficient U-Net Architecture with Multiple Encoders and Attention Mechanism Decoders for Brain Tumor Segmentation
The brain is the center of human control and communication. Hence, it is very important to protect it and provide ideal conditions for it to function. Brain cancer remains one of the leading causes of death in the world, and the detection of malignant brain tumors is a priority in medical image segm...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10001391/ https://www.ncbi.nlm.nih.gov/pubmed/36900017 http://dx.doi.org/10.3390/diagnostics13050872 |
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author | Aboussaleh, Ilyasse Riffi, Jamal Fazazy, Khalid El Mahraz, Mohamed Adnane Tairi, Hamid |
author_facet | Aboussaleh, Ilyasse Riffi, Jamal Fazazy, Khalid El Mahraz, Mohamed Adnane Tairi, Hamid |
author_sort | Aboussaleh, Ilyasse |
collection | PubMed |
description | The brain is the center of human control and communication. Hence, it is very important to protect it and provide ideal conditions for it to function. Brain cancer remains one of the leading causes of death in the world, and the detection of malignant brain tumors is a priority in medical image segmentation. The brain tumor segmentation task aims to identify the pixels that belong to the abnormal areas when compared to normal tissue. Deep learning has shown in recent years its power to solve this problem, especially the U-Net-like architectures. In this paper, we proposed an efficient U-Net architecture with three different encoders: VGG-19, ResNet50, and MobileNetV2. This is based on transfer learning followed by a bidirectional features pyramid network applied to each encoder to obtain more spatial pertinent features. Then, we fused the feature maps extracted from the output of each network and merged them into our decoder with an attention mechanism. The method was evaluated on the BraTS 2020 dataset to segment the different types of tumors and the results show a good performance in terms of dice similarity, with coefficients of 0.8741, 0.8069, and 0.7033 for the whole tumor, core tumor, and enhancing tumor, respectively. |
format | Online Article Text |
id | pubmed-10001391 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-100013912023-03-11 Efficient U-Net Architecture with Multiple Encoders and Attention Mechanism Decoders for Brain Tumor Segmentation Aboussaleh, Ilyasse Riffi, Jamal Fazazy, Khalid El Mahraz, Mohamed Adnane Tairi, Hamid Diagnostics (Basel) Article The brain is the center of human control and communication. Hence, it is very important to protect it and provide ideal conditions for it to function. Brain cancer remains one of the leading causes of death in the world, and the detection of malignant brain tumors is a priority in medical image segmentation. The brain tumor segmentation task aims to identify the pixels that belong to the abnormal areas when compared to normal tissue. Deep learning has shown in recent years its power to solve this problem, especially the U-Net-like architectures. In this paper, we proposed an efficient U-Net architecture with three different encoders: VGG-19, ResNet50, and MobileNetV2. This is based on transfer learning followed by a bidirectional features pyramid network applied to each encoder to obtain more spatial pertinent features. Then, we fused the feature maps extracted from the output of each network and merged them into our decoder with an attention mechanism. The method was evaluated on the BraTS 2020 dataset to segment the different types of tumors and the results show a good performance in terms of dice similarity, with coefficients of 0.8741, 0.8069, and 0.7033 for the whole tumor, core tumor, and enhancing tumor, respectively. MDPI 2023-02-24 /pmc/articles/PMC10001391/ /pubmed/36900017 http://dx.doi.org/10.3390/diagnostics13050872 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Aboussaleh, Ilyasse Riffi, Jamal Fazazy, Khalid El Mahraz, Mohamed Adnane Tairi, Hamid Efficient U-Net Architecture with Multiple Encoders and Attention Mechanism Decoders for Brain Tumor Segmentation |
title | Efficient U-Net Architecture with Multiple Encoders and Attention Mechanism Decoders for Brain Tumor Segmentation |
title_full | Efficient U-Net Architecture with Multiple Encoders and Attention Mechanism Decoders for Brain Tumor Segmentation |
title_fullStr | Efficient U-Net Architecture with Multiple Encoders and Attention Mechanism Decoders for Brain Tumor Segmentation |
title_full_unstemmed | Efficient U-Net Architecture with Multiple Encoders and Attention Mechanism Decoders for Brain Tumor Segmentation |
title_short | Efficient U-Net Architecture with Multiple Encoders and Attention Mechanism Decoders for Brain Tumor Segmentation |
title_sort | efficient u-net architecture with multiple encoders and attention mechanism decoders for brain tumor segmentation |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10001391/ https://www.ncbi.nlm.nih.gov/pubmed/36900017 http://dx.doi.org/10.3390/diagnostics13050872 |
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