Cargando…

Efficient U-Net Architecture with Multiple Encoders and Attention Mechanism Decoders for Brain Tumor Segmentation

The brain is the center of human control and communication. Hence, it is very important to protect it and provide ideal conditions for it to function. Brain cancer remains one of the leading causes of death in the world, and the detection of malignant brain tumors is a priority in medical image segm...

Descripción completa

Detalles Bibliográficos
Autores principales: Aboussaleh, Ilyasse, Riffi, Jamal, Fazazy, Khalid El, Mahraz, Mohamed Adnane, Tairi, Hamid
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10001391/
https://www.ncbi.nlm.nih.gov/pubmed/36900017
http://dx.doi.org/10.3390/diagnostics13050872
_version_ 1784904125816766464
author Aboussaleh, Ilyasse
Riffi, Jamal
Fazazy, Khalid El
Mahraz, Mohamed Adnane
Tairi, Hamid
author_facet Aboussaleh, Ilyasse
Riffi, Jamal
Fazazy, Khalid El
Mahraz, Mohamed Adnane
Tairi, Hamid
author_sort Aboussaleh, Ilyasse
collection PubMed
description The brain is the center of human control and communication. Hence, it is very important to protect it and provide ideal conditions for it to function. Brain cancer remains one of the leading causes of death in the world, and the detection of malignant brain tumors is a priority in medical image segmentation. The brain tumor segmentation task aims to identify the pixels that belong to the abnormal areas when compared to normal tissue. Deep learning has shown in recent years its power to solve this problem, especially the U-Net-like architectures. In this paper, we proposed an efficient U-Net architecture with three different encoders: VGG-19, ResNet50, and MobileNetV2. This is based on transfer learning followed by a bidirectional features pyramid network applied to each encoder to obtain more spatial pertinent features. Then, we fused the feature maps extracted from the output of each network and merged them into our decoder with an attention mechanism. The method was evaluated on the BraTS 2020 dataset to segment the different types of tumors and the results show a good performance in terms of dice similarity, with coefficients of 0.8741, 0.8069, and 0.7033 for the whole tumor, core tumor, and enhancing tumor, respectively.
format Online
Article
Text
id pubmed-10001391
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-100013912023-03-11 Efficient U-Net Architecture with Multiple Encoders and Attention Mechanism Decoders for Brain Tumor Segmentation Aboussaleh, Ilyasse Riffi, Jamal Fazazy, Khalid El Mahraz, Mohamed Adnane Tairi, Hamid Diagnostics (Basel) Article The brain is the center of human control and communication. Hence, it is very important to protect it and provide ideal conditions for it to function. Brain cancer remains one of the leading causes of death in the world, and the detection of malignant brain tumors is a priority in medical image segmentation. The brain tumor segmentation task aims to identify the pixels that belong to the abnormal areas when compared to normal tissue. Deep learning has shown in recent years its power to solve this problem, especially the U-Net-like architectures. In this paper, we proposed an efficient U-Net architecture with three different encoders: VGG-19, ResNet50, and MobileNetV2. This is based on transfer learning followed by a bidirectional features pyramid network applied to each encoder to obtain more spatial pertinent features. Then, we fused the feature maps extracted from the output of each network and merged them into our decoder with an attention mechanism. The method was evaluated on the BraTS 2020 dataset to segment the different types of tumors and the results show a good performance in terms of dice similarity, with coefficients of 0.8741, 0.8069, and 0.7033 for the whole tumor, core tumor, and enhancing tumor, respectively. MDPI 2023-02-24 /pmc/articles/PMC10001391/ /pubmed/36900017 http://dx.doi.org/10.3390/diagnostics13050872 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Aboussaleh, Ilyasse
Riffi, Jamal
Fazazy, Khalid El
Mahraz, Mohamed Adnane
Tairi, Hamid
Efficient U-Net Architecture with Multiple Encoders and Attention Mechanism Decoders for Brain Tumor Segmentation
title Efficient U-Net Architecture with Multiple Encoders and Attention Mechanism Decoders for Brain Tumor Segmentation
title_full Efficient U-Net Architecture with Multiple Encoders and Attention Mechanism Decoders for Brain Tumor Segmentation
title_fullStr Efficient U-Net Architecture with Multiple Encoders and Attention Mechanism Decoders for Brain Tumor Segmentation
title_full_unstemmed Efficient U-Net Architecture with Multiple Encoders and Attention Mechanism Decoders for Brain Tumor Segmentation
title_short Efficient U-Net Architecture with Multiple Encoders and Attention Mechanism Decoders for Brain Tumor Segmentation
title_sort efficient u-net architecture with multiple encoders and attention mechanism decoders for brain tumor segmentation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10001391/
https://www.ncbi.nlm.nih.gov/pubmed/36900017
http://dx.doi.org/10.3390/diagnostics13050872
work_keys_str_mv AT aboussalehilyasse efficientunetarchitecturewithmultipleencodersandattentionmechanismdecodersforbraintumorsegmentation
AT riffijamal efficientunetarchitecturewithmultipleencodersandattentionmechanismdecodersforbraintumorsegmentation
AT fazazykhalidel efficientunetarchitecturewithmultipleencodersandattentionmechanismdecodersforbraintumorsegmentation
AT mahrazmohamedadnane efficientunetarchitecturewithmultipleencodersandattentionmechanismdecodersforbraintumorsegmentation
AT tairihamid efficientunetarchitecturewithmultipleencodersandattentionmechanismdecodersforbraintumorsegmentation