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Deep Learning Algorithms with LIME and Similarity Distance Analysis on COVID-19 Chest X-ray Dataset

In the last few years, many types of research have been conducted on the most harmful pandemic, COVID-19. Machine learning approaches have been applied to investigate chest X-rays of COVID-19 patients in many respects. This study focuses on the deep learning algorithm from the standpoint of feature...

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Autores principales: Chen, Kuan-Yung, Lee, Hsi-Chieh, Lin, Tsung-Chieh, Lee, Chih-Ying, Ho, Zih-Ping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10001452/
https://www.ncbi.nlm.nih.gov/pubmed/36901338
http://dx.doi.org/10.3390/ijerph20054330
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author Chen, Kuan-Yung
Lee, Hsi-Chieh
Lin, Tsung-Chieh
Lee, Chih-Ying
Ho, Zih-Ping
author_facet Chen, Kuan-Yung
Lee, Hsi-Chieh
Lin, Tsung-Chieh
Lee, Chih-Ying
Ho, Zih-Ping
author_sort Chen, Kuan-Yung
collection PubMed
description In the last few years, many types of research have been conducted on the most harmful pandemic, COVID-19. Machine learning approaches have been applied to investigate chest X-rays of COVID-19 patients in many respects. This study focuses on the deep learning algorithm from the standpoint of feature space and similarity analysis. Firstly, we utilized Local Interpretable Model-agnostic Explanations (LIME) to justify the necessity of the region of interest (ROI) process and further prepared ROI via U-Net segmentation that masked out non-lung areas of images to prevent the classifier from being distracted by irrelevant features. The experimental results were promising, with detection performance reaching an overall accuracy of 95.5%, a sensitivity of 98.4%, a precision of 94.7%, and an F1 score of 96.5% on the COVID-19 category. Secondly, we applied similarity analysis to identify outliers and further provided an objective confidence reference specific to the similarity distance to centers or boundaries of clusters while inferring. Finally, the experimental results suggested putting more effort into enhancing the low-accuracy subspace locally, which is identified by the similarity distance to the centers. The experimental results were promising, and based on those perspectives, our approach could be more flexible to deploy dedicated classifiers specific to different subspaces instead of one rigid end-to-end black box model for all feature space.
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spelling pubmed-100014522023-03-11 Deep Learning Algorithms with LIME and Similarity Distance Analysis on COVID-19 Chest X-ray Dataset Chen, Kuan-Yung Lee, Hsi-Chieh Lin, Tsung-Chieh Lee, Chih-Ying Ho, Zih-Ping Int J Environ Res Public Health Article In the last few years, many types of research have been conducted on the most harmful pandemic, COVID-19. Machine learning approaches have been applied to investigate chest X-rays of COVID-19 patients in many respects. This study focuses on the deep learning algorithm from the standpoint of feature space and similarity analysis. Firstly, we utilized Local Interpretable Model-agnostic Explanations (LIME) to justify the necessity of the region of interest (ROI) process and further prepared ROI via U-Net segmentation that masked out non-lung areas of images to prevent the classifier from being distracted by irrelevant features. The experimental results were promising, with detection performance reaching an overall accuracy of 95.5%, a sensitivity of 98.4%, a precision of 94.7%, and an F1 score of 96.5% on the COVID-19 category. Secondly, we applied similarity analysis to identify outliers and further provided an objective confidence reference specific to the similarity distance to centers or boundaries of clusters while inferring. Finally, the experimental results suggested putting more effort into enhancing the low-accuracy subspace locally, which is identified by the similarity distance to the centers. The experimental results were promising, and based on those perspectives, our approach could be more flexible to deploy dedicated classifiers specific to different subspaces instead of one rigid end-to-end black box model for all feature space. MDPI 2023-02-28 /pmc/articles/PMC10001452/ /pubmed/36901338 http://dx.doi.org/10.3390/ijerph20054330 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Chen, Kuan-Yung
Lee, Hsi-Chieh
Lin, Tsung-Chieh
Lee, Chih-Ying
Ho, Zih-Ping
Deep Learning Algorithms with LIME and Similarity Distance Analysis on COVID-19 Chest X-ray Dataset
title Deep Learning Algorithms with LIME and Similarity Distance Analysis on COVID-19 Chest X-ray Dataset
title_full Deep Learning Algorithms with LIME and Similarity Distance Analysis on COVID-19 Chest X-ray Dataset
title_fullStr Deep Learning Algorithms with LIME and Similarity Distance Analysis on COVID-19 Chest X-ray Dataset
title_full_unstemmed Deep Learning Algorithms with LIME and Similarity Distance Analysis on COVID-19 Chest X-ray Dataset
title_short Deep Learning Algorithms with LIME and Similarity Distance Analysis on COVID-19 Chest X-ray Dataset
title_sort deep learning algorithms with lime and similarity distance analysis on covid-19 chest x-ray dataset
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10001452/
https://www.ncbi.nlm.nih.gov/pubmed/36901338
http://dx.doi.org/10.3390/ijerph20054330
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