Cargando…

Oligo—Not Only for Silencing: Overlooked Potential for Multidirectional Action in Plants

Oligo technology is a low-cost and easy-to-implement method for direct manipulation of gene activity. The major advantage of this method is that gene expression can be changed without requiring stable transformation. Oligo technology is mainly used for animal cells. However, the use of oligos in pla...

Descripción completa

Detalles Bibliográficos
Autores principales: Krasnodębski, Cezary, Sawuła, Agnieszka, Kaźmierczak, Urszula, Żuk, Magdalena
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10002457/
https://www.ncbi.nlm.nih.gov/pubmed/36901895
http://dx.doi.org/10.3390/ijms24054466
_version_ 1784904394606641152
author Krasnodębski, Cezary
Sawuła, Agnieszka
Kaźmierczak, Urszula
Żuk, Magdalena
author_facet Krasnodębski, Cezary
Sawuła, Agnieszka
Kaźmierczak, Urszula
Żuk, Magdalena
author_sort Krasnodębski, Cezary
collection PubMed
description Oligo technology is a low-cost and easy-to-implement method for direct manipulation of gene activity. The major advantage of this method is that gene expression can be changed without requiring stable transformation. Oligo technology is mainly used for animal cells. However, the use of oligos in plants seems to be even easier. The oligo effect could be similar to that induced by endogenous miRNAs. In general, the action of exogenously introduced nucleic acids (Oligo) can be divided into a direct interaction with nucleic acids (genomic DNA, hnRNA, transcript) and an indirect interaction via the induction of processes regulating gene expression (at the transcriptional and translational levels) involving regulatory proteins using endogenous cellular mechanisms. Presumed mechanisms of oligonucleotides’ action in plant cells (including differences from animal cells) are described in this review. Basic principles of oligo action in plants that allow bidirectional changes in gene activity and even those that lead to heritable epigenetic changes in gene expression are presented. The effect of oligos is related to the target sequence at which they are directed. This paper also compares different delivery methods and provides a quick guide to using IT tools to help design oligonucleotides.
format Online
Article
Text
id pubmed-10002457
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-100024572023-03-11 Oligo—Not Only for Silencing: Overlooked Potential for Multidirectional Action in Plants Krasnodębski, Cezary Sawuła, Agnieszka Kaźmierczak, Urszula Żuk, Magdalena Int J Mol Sci Review Oligo technology is a low-cost and easy-to-implement method for direct manipulation of gene activity. The major advantage of this method is that gene expression can be changed without requiring stable transformation. Oligo technology is mainly used for animal cells. However, the use of oligos in plants seems to be even easier. The oligo effect could be similar to that induced by endogenous miRNAs. In general, the action of exogenously introduced nucleic acids (Oligo) can be divided into a direct interaction with nucleic acids (genomic DNA, hnRNA, transcript) and an indirect interaction via the induction of processes regulating gene expression (at the transcriptional and translational levels) involving regulatory proteins using endogenous cellular mechanisms. Presumed mechanisms of oligonucleotides’ action in plant cells (including differences from animal cells) are described in this review. Basic principles of oligo action in plants that allow bidirectional changes in gene activity and even those that lead to heritable epigenetic changes in gene expression are presented. The effect of oligos is related to the target sequence at which they are directed. This paper also compares different delivery methods and provides a quick guide to using IT tools to help design oligonucleotides. MDPI 2023-02-24 /pmc/articles/PMC10002457/ /pubmed/36901895 http://dx.doi.org/10.3390/ijms24054466 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Krasnodębski, Cezary
Sawuła, Agnieszka
Kaźmierczak, Urszula
Żuk, Magdalena
Oligo—Not Only for Silencing: Overlooked Potential for Multidirectional Action in Plants
title Oligo—Not Only for Silencing: Overlooked Potential for Multidirectional Action in Plants
title_full Oligo—Not Only for Silencing: Overlooked Potential for Multidirectional Action in Plants
title_fullStr Oligo—Not Only for Silencing: Overlooked Potential for Multidirectional Action in Plants
title_full_unstemmed Oligo—Not Only for Silencing: Overlooked Potential for Multidirectional Action in Plants
title_short Oligo—Not Only for Silencing: Overlooked Potential for Multidirectional Action in Plants
title_sort oligo—not only for silencing: overlooked potential for multidirectional action in plants
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10002457/
https://www.ncbi.nlm.nih.gov/pubmed/36901895
http://dx.doi.org/10.3390/ijms24054466
work_keys_str_mv AT krasnodebskicezary oligonotonlyforsilencingoverlookedpotentialformultidirectionalactioninplants
AT sawułaagnieszka oligonotonlyforsilencingoverlookedpotentialformultidirectionalactioninplants
AT kazmierczakurszula oligonotonlyforsilencingoverlookedpotentialformultidirectionalactioninplants
AT zukmagdalena oligonotonlyforsilencingoverlookedpotentialformultidirectionalactioninplants