Cargando…

PIFiA: Self-supervised Approach for Protein Functional Annotation from Single-Cell Imaging Data

Fluorescence microscopy data describe protein localization patterns at single-cell resolution and have the potential to reveal whole-proteome functional information with remarkable precision. Yet, extracting biologically meaningful representations from cell micrographs remains a major challenge. Exi...

Descripción completa

Detalles Bibliográficos
Autores principales:	Razdaibiedina, Anastasia, Brechalov, Alexander, Friesen, Helena, Usaj, Mojca Mattiazzi, Masinas, Myra Paz David, Suresh, Harsha Garadi, Wang, Kyle, Boone, Charles, Ba, Jimmy, Andrews, Brenda
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Cold Spring Harbor Laboratory 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10002629/ https://www.ncbi.nlm.nih.gov/pubmed/36909656 http://dx.doi.org/10.1101/2023.02.24.529975

Ejemplares similares

TheCellVision.org: A Database for Visualizing and Mining High-Content Cell Imaging Projects
por: Masinas, Myra Paz David, et al.
Publicado: (2020)

Systematic genetics and single‐cell imaging reveal widespread morphological pleiotropy and cell‐to‐cell variability
por: Mattiazzi Usaj, Mojca, et al.
Publicado: (2020)

Programa integral de fortalecimiento institucional PIFI 3.2

The structure and function of deubiquitinases: lessons from budding yeast
por: Suresh, Harsha Garadi, et al.
Publicado: (2020)

Calendario de actividades y compromisos de trabajo para la elavboración del PIFI 3.2.
Publicado: (2005)

A study to prolong breastfeeding duration: design and rationale of the Parent Infant Feeding Initiative (PIFI) randomised controlled trial
por: Maycock, Bruce R., et al.
Publicado: (2015)

Semi-Supervised Pipeline for Autonomous Annotation of SARS-CoV-2 Genomes
por: Beck, Kristen L., et al.
Publicado: (2021)

TheCellMap.org: A Web-Accessible Database for Visualizing and Mining the Global Yeast Genetic Interaction Network
por: Usaj, Matej, et al.
Publicado: (2017)

Supervised classification enables rapid annotation of cell atlases
por: Pliner, Hannah A., et al.
Publicado: (2019)

Automated analysis of high‐content microscopy data with deep learning
por: Kraus, Oren Z, et al.
Publicado: (2017)

A genome‐scale yeast library with inducible expression of individual genes
por: Arita, Yuko, et al.
Publicado: (2021)

Integrating Deep Supervised, Self-Supervised and Unsupervised Learning for Single-Cell RNA-seq Clustering and Annotation
por: Chen, Liang, et al.
Publicado: (2020)

Integrating information retrieval with distant supervision for Gene Ontology annotation
por: Zhu, Dongqing, et al.
Publicado: (2014)

Bootstrapping semi-supervised annotation method for potential suicidal messages
por: Acuña Caicedo, Roberto Wellington, et al.
Publicado: (2022)

SGAtools: one-stop analysis and visualization of array-based genetic interaction screens
por: Wagih, Omar, et al.
Publicado: (2013)

Partially-supervised protein subclass discovery with simultaneous annotation of functional residues
por: Georgi, Benjamin, et al.
Publicado: (2009)

Using distant supervision to augment manually annotated data for relation extraction
por: Su, Peng, et al.
Publicado: (2019)

CYCLoPs: A Comprehensive Database Constructed from Automated Analysis of Protein Abundance and Subcellular Localization Patterns in Saccharomyces cerevisiae
por: Koh, Judice L. Y., et al.
Publicado: (2015)

Genome-Wide Localization Study of Yeast Pex11 Identifies Peroxisome–Mitochondria Interactions through the ERMES Complex
por: Mattiazzi Ušaj, M., et al.
Publicado: (2015)

BusyBee Web: metagenomic data analysis by bootstrapped supervised binning and annotation
por: Laczny, Cedric C., et al.
Publicado: (2017)

MAGA: A Supervised Method to Detect Motifs From Annotated Groups in Alignments
por: Mier, Pablo, et al.
Publicado: (2020)

Weakly Supervised Segmentation of COVID19 Infection with Scribble Annotation on CT Images
por: Liu, Xiaoming, et al.
Publicado: (2022)

Exploiting generative self-supervised learning for the assessment of biological images with lack of annotations
por: Mascolini, Alessio, et al.
Publicado: (2022)

Effects of Single-Nucleotide Polymorphisms in Cytokine, Toll-Like Receptor, and Progesterone Receptor Genes on Risk of Miscarriage
por: Razdaibiedina, Anastasiia, et al.
Publicado: (2018)

Automatic Detection of Twitter Users Who Express Chronic Stress Experiences via Supervised Machine Learning and Natural Language Processing
por: Yang, Yuan-Chi, et al.
Publicado: (2022)

Biomarker discovery across annotated and unannotated microarray datasets using semi-supervised learning
por: Harris, Cole, et al.
Publicado: (2008)

Closing the loop: from paper to protein annotation using supervised Gene Ontology classification
por: Gobeill, Julien, et al.
Publicado: (2014)

Development of Supervised Speaker Diarization System Based on the PyAnnote Audio Processing Library
por: Khoma, Volodymyr, et al.
Publicado: (2023)

Feature-enhanced adversarial semi-supervised semantic segmentation network for pulmonary embolism annotation
por: Cheng, Ting-Wei, et al.
Publicado: (2023)

Efficient semi-supervised semantic segmentation of electron microscopy cancer images with sparse annotations
por: Pagano, Lucas, et al.
Publicado: (2023)

Yeast functional genomics and cell biology: no longer in the dark
por: Friesen, Helena, et al.
Publicado: (2003)

Bck2 Acts through the MADS Box Protein Mcm1 to Activate Cell-Cycle-Regulated Genes in Budding Yeast
por: Bastajian, Nazareth, et al.
Publicado: (2013)

Self-supervised learning mechanism for identification of eyelid malignant melanoma in pathologic slides with limited annotation
por: Wang, Linyan, et al.
Publicado: (2022)

Localization supervision of chest x-ray classifiers using label-specific eye-tracking annotation
por: Bigolin Lanfredi, Ricardo, et al.
Publicado: (2023)

A Weakly Supervised Learning Method for Cell Detection and Tracking Using Incomplete Initial Annotations
por: Wu, Hao, et al.
Publicado: (2023)

Neurotoxic phospholipase A(2) toxicity model: An insight from mammalian cells
por: Vardjan, Nina, et al.
Publicado: (2013)

Supervised Text Classification System Detects Fontan Patients in Electronic Records With Higher Accuracy Than ICD Codes
por: Guo, Yuting, et al.
Publicado: (2023)

CALLR: a semi-supervised cell-type annotation method for single-cell RNA sequencing data
por: Wei, Ziyang, et al.
Publicado: (2021)

Learning rate of students detecting and annotating pediatric wrist fractures in supervised artificial intelligence dataset preparations
por: Nagy, Eszter, et al.
Publicado: (2022)

Prolonged starvation drives reversible sequestration of lipid biosynthetic enzymes and organelle reorganization in Saccharomyces cerevisiae
por: Suresh, Harsha Garadi, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_q3nbo0g1r61m0fphv9mqg99fiu