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Genome-Wide Association Study and Transcriptome of Japanese Patients with Developmental Dysplasia of the Hip Demonstrates an Association with the Ferroptosis Signaling Pathway
This study examined the association between developmental dysplasia of the hip (DDH) and disease-associated loci in a Japanese cohort. A genome-wide association study (GWAS) of 238 Japanese patients with DDH and 2044 healthy individuals was performed. As a replicate, GWAS was also conducted on the U...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10003185/ https://www.ncbi.nlm.nih.gov/pubmed/36902448 http://dx.doi.org/10.3390/ijms24055019 |
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author | Mori, Yu Ueno, Kazuko Chiba, Daisuke Hashimoto, Ko Kawai, Yosuke Baba, Kazuyoshi Tanaka, Hidetatsu Aki, Takashi Ogasawara, Masanori Shibasaki, Naoto Tokunaga, Katsushi Aizawa, Toshimi Nagasaki, Masao |
author_facet | Mori, Yu Ueno, Kazuko Chiba, Daisuke Hashimoto, Ko Kawai, Yosuke Baba, Kazuyoshi Tanaka, Hidetatsu Aki, Takashi Ogasawara, Masanori Shibasaki, Naoto Tokunaga, Katsushi Aizawa, Toshimi Nagasaki, Masao |
author_sort | Mori, Yu |
collection | PubMed |
description | This study examined the association between developmental dysplasia of the hip (DDH) and disease-associated loci in a Japanese cohort. A genome-wide association study (GWAS) of 238 Japanese patients with DDH and 2044 healthy individuals was performed. As a replicate, GWAS was also conducted on the UK Biobank data with 3315 cases and matched 74,038 controls. Gene set enrichment analyses (GSEAs) of both the genetics and transcriptome of DDH were performed. Transcriptome analysis of cartilage specimens from DDH-associated osteoarthritis and femoral neck fractures was performed as a control. Most of the lead variants were very low-frequency ones in the UK, and variants in the Japanese GWAS could not be replicated with the UK GWAS. We assigned DDH-related candidate variants to 42 and 81 genes from the Japanese and UK GWASs, respectively, using functional mapping and annotation. GSEA of gene ontology, disease ontology, and canonical pathways identified the most enriched pathway to be the ferroptosis signaling pathway, both in the Japanese gene set as well as the Japanese and UK merged set. Transcriptome GSEA also identified significant downregulation of genes in the ferroptosis signaling pathway. Thus, the ferroptosis signaling pathway may be associated with the pathogenic mechanism of DDH. |
format | Online Article Text |
id | pubmed-10003185 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-100031852023-03-11 Genome-Wide Association Study and Transcriptome of Japanese Patients with Developmental Dysplasia of the Hip Demonstrates an Association with the Ferroptosis Signaling Pathway Mori, Yu Ueno, Kazuko Chiba, Daisuke Hashimoto, Ko Kawai, Yosuke Baba, Kazuyoshi Tanaka, Hidetatsu Aki, Takashi Ogasawara, Masanori Shibasaki, Naoto Tokunaga, Katsushi Aizawa, Toshimi Nagasaki, Masao Int J Mol Sci Article This study examined the association between developmental dysplasia of the hip (DDH) and disease-associated loci in a Japanese cohort. A genome-wide association study (GWAS) of 238 Japanese patients with DDH and 2044 healthy individuals was performed. As a replicate, GWAS was also conducted on the UK Biobank data with 3315 cases and matched 74,038 controls. Gene set enrichment analyses (GSEAs) of both the genetics and transcriptome of DDH were performed. Transcriptome analysis of cartilage specimens from DDH-associated osteoarthritis and femoral neck fractures was performed as a control. Most of the lead variants were very low-frequency ones in the UK, and variants in the Japanese GWAS could not be replicated with the UK GWAS. We assigned DDH-related candidate variants to 42 and 81 genes from the Japanese and UK GWASs, respectively, using functional mapping and annotation. GSEA of gene ontology, disease ontology, and canonical pathways identified the most enriched pathway to be the ferroptosis signaling pathway, both in the Japanese gene set as well as the Japanese and UK merged set. Transcriptome GSEA also identified significant downregulation of genes in the ferroptosis signaling pathway. Thus, the ferroptosis signaling pathway may be associated with the pathogenic mechanism of DDH. MDPI 2023-03-06 /pmc/articles/PMC10003185/ /pubmed/36902448 http://dx.doi.org/10.3390/ijms24055019 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Mori, Yu Ueno, Kazuko Chiba, Daisuke Hashimoto, Ko Kawai, Yosuke Baba, Kazuyoshi Tanaka, Hidetatsu Aki, Takashi Ogasawara, Masanori Shibasaki, Naoto Tokunaga, Katsushi Aizawa, Toshimi Nagasaki, Masao Genome-Wide Association Study and Transcriptome of Japanese Patients with Developmental Dysplasia of the Hip Demonstrates an Association with the Ferroptosis Signaling Pathway |
title | Genome-Wide Association Study and Transcriptome of Japanese Patients with Developmental Dysplasia of the Hip Demonstrates an Association with the Ferroptosis Signaling Pathway |
title_full | Genome-Wide Association Study and Transcriptome of Japanese Patients with Developmental Dysplasia of the Hip Demonstrates an Association with the Ferroptosis Signaling Pathway |
title_fullStr | Genome-Wide Association Study and Transcriptome of Japanese Patients with Developmental Dysplasia of the Hip Demonstrates an Association with the Ferroptosis Signaling Pathway |
title_full_unstemmed | Genome-Wide Association Study and Transcriptome of Japanese Patients with Developmental Dysplasia of the Hip Demonstrates an Association with the Ferroptosis Signaling Pathway |
title_short | Genome-Wide Association Study and Transcriptome of Japanese Patients with Developmental Dysplasia of the Hip Demonstrates an Association with the Ferroptosis Signaling Pathway |
title_sort | genome-wide association study and transcriptome of japanese patients with developmental dysplasia of the hip demonstrates an association with the ferroptosis signaling pathway |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10003185/ https://www.ncbi.nlm.nih.gov/pubmed/36902448 http://dx.doi.org/10.3390/ijms24055019 |
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