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Combinatorial Blood Platelets-Derived circRNA and mRNA Signature for Early-Stage Lung Cancer Detection

Despite the diversity of liquid biopsy transcriptomic repertoire, numerous studies often exploit only a single RNA type signature for diagnostic biomarker potential. This frequently results in insufficient sensitivity and specificity necessary to reach diagnostic utility. Combinatorial biomarker app...

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Autores principales: D’Ambrosi, Silvia, Giannoukakos, Stavros, Antunes-Ferreira, Mafalda, Pedraz-Valdunciel, Carlos, Bracht, Jillian W. P., Potie, Nicolas, Gimenez-Capitan, Ana, Hackenberg, Michael, Fernandez Hilario, Alberto, Molina-Vila, Miguel A., Rosell, Rafael, Würdinger, Thomas, Koppers-Lalic, Danijela
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10003255/
https://www.ncbi.nlm.nih.gov/pubmed/36902312
http://dx.doi.org/10.3390/ijms24054881
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author D’Ambrosi, Silvia
Giannoukakos, Stavros
Antunes-Ferreira, Mafalda
Pedraz-Valdunciel, Carlos
Bracht, Jillian W. P.
Potie, Nicolas
Gimenez-Capitan, Ana
Hackenberg, Michael
Fernandez Hilario, Alberto
Molina-Vila, Miguel A.
Rosell, Rafael
Würdinger, Thomas
Koppers-Lalic, Danijela
author_facet D’Ambrosi, Silvia
Giannoukakos, Stavros
Antunes-Ferreira, Mafalda
Pedraz-Valdunciel, Carlos
Bracht, Jillian W. P.
Potie, Nicolas
Gimenez-Capitan, Ana
Hackenberg, Michael
Fernandez Hilario, Alberto
Molina-Vila, Miguel A.
Rosell, Rafael
Würdinger, Thomas
Koppers-Lalic, Danijela
author_sort D’Ambrosi, Silvia
collection PubMed
description Despite the diversity of liquid biopsy transcriptomic repertoire, numerous studies often exploit only a single RNA type signature for diagnostic biomarker potential. This frequently results in insufficient sensitivity and specificity necessary to reach diagnostic utility. Combinatorial biomarker approaches may offer a more reliable diagnosis. Here, we investigated the synergistic contributions of circRNA and mRNA signatures derived from blood platelets as biomarkers for lung cancer detection. We developed a comprehensive bioinformatics pipeline permitting an analysis of platelet-circRNA and mRNA derived from non-cancer individuals and lung cancer patients. An optimal selected signature is then used to generate the predictive classification model using machine learning algorithm. Using an individual signature of 21 circRNA and 28 mRNA, the predictive models reached an area under the curve (AUC) of 0.88 and 0.81, respectively. Importantly, combinatorial analysis including both types of RNAs resulted in an 8-target signature (6 mRNA and 2 circRNA), enhancing the differentiation of lung cancer from controls (AUC of 0.92). Additionally, we identified five biomarkers potentially specific for early-stage detection of lung cancer. Our proof-of-concept study presents the first multi-analyte-based approach for the analysis of platelets-derived biomarkers, providing a potential combinatorial diagnostic signature for lung cancer detection.
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spelling pubmed-100032552023-03-11 Combinatorial Blood Platelets-Derived circRNA and mRNA Signature for Early-Stage Lung Cancer Detection D’Ambrosi, Silvia Giannoukakos, Stavros Antunes-Ferreira, Mafalda Pedraz-Valdunciel, Carlos Bracht, Jillian W. P. Potie, Nicolas Gimenez-Capitan, Ana Hackenberg, Michael Fernandez Hilario, Alberto Molina-Vila, Miguel A. Rosell, Rafael Würdinger, Thomas Koppers-Lalic, Danijela Int J Mol Sci Article Despite the diversity of liquid biopsy transcriptomic repertoire, numerous studies often exploit only a single RNA type signature for diagnostic biomarker potential. This frequently results in insufficient sensitivity and specificity necessary to reach diagnostic utility. Combinatorial biomarker approaches may offer a more reliable diagnosis. Here, we investigated the synergistic contributions of circRNA and mRNA signatures derived from blood platelets as biomarkers for lung cancer detection. We developed a comprehensive bioinformatics pipeline permitting an analysis of platelet-circRNA and mRNA derived from non-cancer individuals and lung cancer patients. An optimal selected signature is then used to generate the predictive classification model using machine learning algorithm. Using an individual signature of 21 circRNA and 28 mRNA, the predictive models reached an area under the curve (AUC) of 0.88 and 0.81, respectively. Importantly, combinatorial analysis including both types of RNAs resulted in an 8-target signature (6 mRNA and 2 circRNA), enhancing the differentiation of lung cancer from controls (AUC of 0.92). Additionally, we identified five biomarkers potentially specific for early-stage detection of lung cancer. Our proof-of-concept study presents the first multi-analyte-based approach for the analysis of platelets-derived biomarkers, providing a potential combinatorial diagnostic signature for lung cancer detection. MDPI 2023-03-02 /pmc/articles/PMC10003255/ /pubmed/36902312 http://dx.doi.org/10.3390/ijms24054881 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
D’Ambrosi, Silvia
Giannoukakos, Stavros
Antunes-Ferreira, Mafalda
Pedraz-Valdunciel, Carlos
Bracht, Jillian W. P.
Potie, Nicolas
Gimenez-Capitan, Ana
Hackenberg, Michael
Fernandez Hilario, Alberto
Molina-Vila, Miguel A.
Rosell, Rafael
Würdinger, Thomas
Koppers-Lalic, Danijela
Combinatorial Blood Platelets-Derived circRNA and mRNA Signature for Early-Stage Lung Cancer Detection
title Combinatorial Blood Platelets-Derived circRNA and mRNA Signature for Early-Stage Lung Cancer Detection
title_full Combinatorial Blood Platelets-Derived circRNA and mRNA Signature for Early-Stage Lung Cancer Detection
title_fullStr Combinatorial Blood Platelets-Derived circRNA and mRNA Signature for Early-Stage Lung Cancer Detection
title_full_unstemmed Combinatorial Blood Platelets-Derived circRNA and mRNA Signature for Early-Stage Lung Cancer Detection
title_short Combinatorial Blood Platelets-Derived circRNA and mRNA Signature for Early-Stage Lung Cancer Detection
title_sort combinatorial blood platelets-derived circrna and mrna signature for early-stage lung cancer detection
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10003255/
https://www.ncbi.nlm.nih.gov/pubmed/36902312
http://dx.doi.org/10.3390/ijms24054881
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