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Identification of a Novel Cuproptosis-Related Gene Signature and Integrative Analyses in Thyroid Cancer

Cuproptosis is a novel programmed cell death that depends on copper. The role and potential mechanism of cuproptosis-related genes (CRGs) in thyroid cancer (THCA) are still unclear. In our study, we randomly divided THCA patients from the TCGA database into a training set and a testing set. A cuprop...

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Autores principales: Huang, Jiapeng, Shi, Jinyuan, Wu, Pu, Sun, Wei, Zhang, Dalin, Wang, Zhihong, Ji, Xiaoyu, Lv, Chengzhou, Zhang, Ting, Zhang, Ping, Zhang, Hao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10004009/
https://www.ncbi.nlm.nih.gov/pubmed/36902801
http://dx.doi.org/10.3390/jcm12052014
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author Huang, Jiapeng
Shi, Jinyuan
Wu, Pu
Sun, Wei
Zhang, Dalin
Wang, Zhihong
Ji, Xiaoyu
Lv, Chengzhou
Zhang, Ting
Zhang, Ping
Zhang, Hao
author_facet Huang, Jiapeng
Shi, Jinyuan
Wu, Pu
Sun, Wei
Zhang, Dalin
Wang, Zhihong
Ji, Xiaoyu
Lv, Chengzhou
Zhang, Ting
Zhang, Ping
Zhang, Hao
author_sort Huang, Jiapeng
collection PubMed
description Cuproptosis is a novel programmed cell death that depends on copper. The role and potential mechanism of cuproptosis-related genes (CRGs) in thyroid cancer (THCA) are still unclear. In our study, we randomly divided THCA patients from the TCGA database into a training set and a testing set. A cuproptosis-related signature consisting of six genes (SLC31A1, LIAS, DLD, MTF1, CDKN2A, and GCSH) was constructed using the training set to predict the prognosis of THCA and was verified with the testing set. All patients were classified into low- and high-risk groups according to risk score. Patients in the high-risk group had a poorer overall survival (OS) than those in the low-risk group. The area under the curve (AUC) values for 5 years, 8 years, and 10 years were 0.845, 0.885, and 0.898, respectively. The tumor immune cell infiltration and immune status were significantly higher in the low-risk group, which indicated a better response to immune checkpoint inhibitors (ICIs). The expression of six cuproptosis-related genes in our prognostic signature were verified by qRT-PCR in our THCA tissues, and the results were consistent with TCGA database. In summary, our cuproptosis-related risk signature has a good predictive ability regarding the prognosis of THCA patients. Targeting cuproptosis may be a better alternative for THCA patients.
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spelling pubmed-100040092023-03-11 Identification of a Novel Cuproptosis-Related Gene Signature and Integrative Analyses in Thyroid Cancer Huang, Jiapeng Shi, Jinyuan Wu, Pu Sun, Wei Zhang, Dalin Wang, Zhihong Ji, Xiaoyu Lv, Chengzhou Zhang, Ting Zhang, Ping Zhang, Hao J Clin Med Article Cuproptosis is a novel programmed cell death that depends on copper. The role and potential mechanism of cuproptosis-related genes (CRGs) in thyroid cancer (THCA) are still unclear. In our study, we randomly divided THCA patients from the TCGA database into a training set and a testing set. A cuproptosis-related signature consisting of six genes (SLC31A1, LIAS, DLD, MTF1, CDKN2A, and GCSH) was constructed using the training set to predict the prognosis of THCA and was verified with the testing set. All patients were classified into low- and high-risk groups according to risk score. Patients in the high-risk group had a poorer overall survival (OS) than those in the low-risk group. The area under the curve (AUC) values for 5 years, 8 years, and 10 years were 0.845, 0.885, and 0.898, respectively. The tumor immune cell infiltration and immune status were significantly higher in the low-risk group, which indicated a better response to immune checkpoint inhibitors (ICIs). The expression of six cuproptosis-related genes in our prognostic signature were verified by qRT-PCR in our THCA tissues, and the results were consistent with TCGA database. In summary, our cuproptosis-related risk signature has a good predictive ability regarding the prognosis of THCA patients. Targeting cuproptosis may be a better alternative for THCA patients. MDPI 2023-03-03 /pmc/articles/PMC10004009/ /pubmed/36902801 http://dx.doi.org/10.3390/jcm12052014 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Huang, Jiapeng
Shi, Jinyuan
Wu, Pu
Sun, Wei
Zhang, Dalin
Wang, Zhihong
Ji, Xiaoyu
Lv, Chengzhou
Zhang, Ting
Zhang, Ping
Zhang, Hao
Identification of a Novel Cuproptosis-Related Gene Signature and Integrative Analyses in Thyroid Cancer
title Identification of a Novel Cuproptosis-Related Gene Signature and Integrative Analyses in Thyroid Cancer
title_full Identification of a Novel Cuproptosis-Related Gene Signature and Integrative Analyses in Thyroid Cancer
title_fullStr Identification of a Novel Cuproptosis-Related Gene Signature and Integrative Analyses in Thyroid Cancer
title_full_unstemmed Identification of a Novel Cuproptosis-Related Gene Signature and Integrative Analyses in Thyroid Cancer
title_short Identification of a Novel Cuproptosis-Related Gene Signature and Integrative Analyses in Thyroid Cancer
title_sort identification of a novel cuproptosis-related gene signature and integrative analyses in thyroid cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10004009/
https://www.ncbi.nlm.nih.gov/pubmed/36902801
http://dx.doi.org/10.3390/jcm12052014
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