Cargando…

The shift of soil microbial community induced by cropping sequence affect soil properties and crop yield

Rational cropping maintains high soil fertility and a healthy ecosystem. Soil microorganism is the controller of soil fertility. Meanwhile, soil microbial communities also respond to different cropping patterns. The mechanisms by which biotic and abiotic factors were affected by different cropping s...

Descripción completa

Detalles Bibliográficos
Autores principales: Sun, Lei, Wang, Shuang, Narsing Rao, Manik Prabhu, Shi, Yu, Lian, Zheng-Han, Jin, Pin-Jiao, Wang, Wei, Li, Yu-Mei, Wang, Kang-Kang, Banerjee, Aparna, Cui, Xiao-Yang, Wei, Dan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10004276/
https://www.ncbi.nlm.nih.gov/pubmed/36910216
http://dx.doi.org/10.3389/fmicb.2023.1095688
_version_ 1784904792955420672
author Sun, Lei
Wang, Shuang
Narsing Rao, Manik Prabhu
Shi, Yu
Lian, Zheng-Han
Jin, Pin-Jiao
Wang, Wei
Li, Yu-Mei
Wang, Kang-Kang
Banerjee, Aparna
Cui, Xiao-Yang
Wei, Dan
author_facet Sun, Lei
Wang, Shuang
Narsing Rao, Manik Prabhu
Shi, Yu
Lian, Zheng-Han
Jin, Pin-Jiao
Wang, Wei
Li, Yu-Mei
Wang, Kang-Kang
Banerjee, Aparna
Cui, Xiao-Yang
Wei, Dan
author_sort Sun, Lei
collection PubMed
description Rational cropping maintains high soil fertility and a healthy ecosystem. Soil microorganism is the controller of soil fertility. Meanwhile, soil microbial communities also respond to different cropping patterns. The mechanisms by which biotic and abiotic factors were affected by different cropping sequences remain unclear in the major grain-producing regions of northeastern China. To evaluate the effects of different cropping sequences under conventional fertilization practices on soil properties, microbial communities, and crop yield, six types of plant cropping systems were performed, including soybean monoculture, wheat-soybean rotation, wheat-maize-soybean rotation, soybean-maize-maize rotation, maize-soybean-soybean rotation and maize monoculture. Our results showed that compared with the single cropping system, soybean and maize crop rotation in different combinations or sequences can increase soil total organic carbon and nutrients, and promote soybean and maize yield, especially using soybean-maize-maize and maize-soybean-soybean planting system. The 16S rRNA and internal transcribed spacer (ITS) amplicon sequencing showed that different cropping systems had different effects on bacterial and fungal communities. The bacterial and fungal communities of soybean monoculture were less diverse when compared to the other crop rotation planting system. Among the different cropping sequences, the number of observed bacterial species was greater in soybean-maize-maize planting setup and fungal species in maize-soybean-soybean planting setup. Some dominant and functional bacterial and fungal taxa in the rotation soils were observed. Network-based analysis suggests that bacterial phyla Acidobacteria and Actinobacteria while fungal phylum Ascomycota showed a positive correlation with other microbial communities. The phylogenetic investigation of communities by reconstruction of unobserved states (PICRUSt) result showed the presence of various metabolic pathways. Besides, the soybean-maize-maize significantly increased the proportion of some beneficial microorganisms in the soil and reduced the soil-borne animal and plant pathogens. These results warrant further investigation into the mechanisms driving responses of beneficial microbial communities and their capacity on improving soil fertility during legume cropping. The present study extends our understanding of how different crop rotations effect soil parameters, microbial diversity, and metabolic functions, and reveals the importance of crop rotation sequences. These findings could be used to guide decision-making from the microbial perspective for annual crop planting and soil management approaches.
format Online
Article
Text
id pubmed-10004276
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-100042762023-03-11 The shift of soil microbial community induced by cropping sequence affect soil properties and crop yield Sun, Lei Wang, Shuang Narsing Rao, Manik Prabhu Shi, Yu Lian, Zheng-Han Jin, Pin-Jiao Wang, Wei Li, Yu-Mei Wang, Kang-Kang Banerjee, Aparna Cui, Xiao-Yang Wei, Dan Front Microbiol Microbiology Rational cropping maintains high soil fertility and a healthy ecosystem. Soil microorganism is the controller of soil fertility. Meanwhile, soil microbial communities also respond to different cropping patterns. The mechanisms by which biotic and abiotic factors were affected by different cropping sequences remain unclear in the major grain-producing regions of northeastern China. To evaluate the effects of different cropping sequences under conventional fertilization practices on soil properties, microbial communities, and crop yield, six types of plant cropping systems were performed, including soybean monoculture, wheat-soybean rotation, wheat-maize-soybean rotation, soybean-maize-maize rotation, maize-soybean-soybean rotation and maize monoculture. Our results showed that compared with the single cropping system, soybean and maize crop rotation in different combinations or sequences can increase soil total organic carbon and nutrients, and promote soybean and maize yield, especially using soybean-maize-maize and maize-soybean-soybean planting system. The 16S rRNA and internal transcribed spacer (ITS) amplicon sequencing showed that different cropping systems had different effects on bacterial and fungal communities. The bacterial and fungal communities of soybean monoculture were less diverse when compared to the other crop rotation planting system. Among the different cropping sequences, the number of observed bacterial species was greater in soybean-maize-maize planting setup and fungal species in maize-soybean-soybean planting setup. Some dominant and functional bacterial and fungal taxa in the rotation soils were observed. Network-based analysis suggests that bacterial phyla Acidobacteria and Actinobacteria while fungal phylum Ascomycota showed a positive correlation with other microbial communities. The phylogenetic investigation of communities by reconstruction of unobserved states (PICRUSt) result showed the presence of various metabolic pathways. Besides, the soybean-maize-maize significantly increased the proportion of some beneficial microorganisms in the soil and reduced the soil-borne animal and plant pathogens. These results warrant further investigation into the mechanisms driving responses of beneficial microbial communities and their capacity on improving soil fertility during legume cropping. The present study extends our understanding of how different crop rotations effect soil parameters, microbial diversity, and metabolic functions, and reveals the importance of crop rotation sequences. These findings could be used to guide decision-making from the microbial perspective for annual crop planting and soil management approaches. Frontiers Media S.A. 2023-02-16 /pmc/articles/PMC10004276/ /pubmed/36910216 http://dx.doi.org/10.3389/fmicb.2023.1095688 Text en Copyright © 2023 Sun, Wang, Narsing Rao, Shi, Lian, Jin, Wang, Li, Wang, Banerjee, Cui and Wei. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Sun, Lei
Wang, Shuang
Narsing Rao, Manik Prabhu
Shi, Yu
Lian, Zheng-Han
Jin, Pin-Jiao
Wang, Wei
Li, Yu-Mei
Wang, Kang-Kang
Banerjee, Aparna
Cui, Xiao-Yang
Wei, Dan
The shift of soil microbial community induced by cropping sequence affect soil properties and crop yield
title The shift of soil microbial community induced by cropping sequence affect soil properties and crop yield
title_full The shift of soil microbial community induced by cropping sequence affect soil properties and crop yield
title_fullStr The shift of soil microbial community induced by cropping sequence affect soil properties and crop yield
title_full_unstemmed The shift of soil microbial community induced by cropping sequence affect soil properties and crop yield
title_short The shift of soil microbial community induced by cropping sequence affect soil properties and crop yield
title_sort shift of soil microbial community induced by cropping sequence affect soil properties and crop yield
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10004276/
https://www.ncbi.nlm.nih.gov/pubmed/36910216
http://dx.doi.org/10.3389/fmicb.2023.1095688
work_keys_str_mv AT sunlei theshiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT wangshuang theshiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT narsingraomanikprabhu theshiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT shiyu theshiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT lianzhenghan theshiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT jinpinjiao theshiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT wangwei theshiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT liyumei theshiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT wangkangkang theshiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT banerjeeaparna theshiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT cuixiaoyang theshiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT weidan theshiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT sunlei shiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT wangshuang shiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT narsingraomanikprabhu shiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT shiyu shiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT lianzhenghan shiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT jinpinjiao shiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT wangwei shiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT liyumei shiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT wangkangkang shiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT banerjeeaparna shiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT cuixiaoyang shiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield
AT weidan shiftofsoilmicrobialcommunityinducedbycroppingsequenceaffectsoilpropertiesandcropyield