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Whole-genome sequence data of a Salmonella enterica serovar Rissen sequence type 8877 isolated from cracked table egg in Sudan
Salmonella enterica serovar Rissen is an emerging and important Salmonella serovar prevalent in live animals and foods from retail markets worldwide. Here, we describe the whole-genome sequence of Salmonella enterica Serovar Rissen Sequence Type 8877 isolated from a cracked table egg in Sudan. The w...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10006416/ https://www.ncbi.nlm.nih.gov/pubmed/36915641 http://dx.doi.org/10.1016/j.dib.2023.109005 |
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author | Elhassan, Mortada M.O. Adam, Habiba B.A. Fagir, Shaimaa S.A.O. Mohamed, Sofia B. Khaier, Mona A.M. Abdulaziz, Romisa Ismail, Arshad Allam, Mushal |
author_facet | Elhassan, Mortada M.O. Adam, Habiba B.A. Fagir, Shaimaa S.A.O. Mohamed, Sofia B. Khaier, Mona A.M. Abdulaziz, Romisa Ismail, Arshad Allam, Mushal |
author_sort | Elhassan, Mortada M.O. |
collection | PubMed |
description | Salmonella enterica serovar Rissen is an emerging and important Salmonella serovar prevalent in live animals and foods from retail markets worldwide. Here, we describe the whole-genome sequence of Salmonella enterica Serovar Rissen Sequence Type 8877 isolated from a cracked table egg in Sudan. The whole-genome sequencing was obtained using Illumina Miseq platform. The quality of the sequenced read, the De novo assembly, and the sequencing typing was conducted by JEKESA pipeline (https://github.com/stanikae/jekesa). The assembled genome was also uploaded to the Center for Genomic Epidemiology web server to determine acquired antibiotic resistance genes, predict the serovar, and the antigenic profile. The genome of Salmonella enterica serovar Rissen 1-M1 was found to harbor 4,689 protein-coding genes, 96 RNA genes, and 115 pseudogenes, as predicted by NCBI Prokaryotic Genome Annotation Pipeline. This whole genome shotgun project has been deposited at DDBJ/ENA/GenBank under accession JAPSFB000000000. |
format | Online Article Text |
id | pubmed-10006416 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-100064162023-03-12 Whole-genome sequence data of a Salmonella enterica serovar Rissen sequence type 8877 isolated from cracked table egg in Sudan Elhassan, Mortada M.O. Adam, Habiba B.A. Fagir, Shaimaa S.A.O. Mohamed, Sofia B. Khaier, Mona A.M. Abdulaziz, Romisa Ismail, Arshad Allam, Mushal Data Brief Data Article Salmonella enterica serovar Rissen is an emerging and important Salmonella serovar prevalent in live animals and foods from retail markets worldwide. Here, we describe the whole-genome sequence of Salmonella enterica Serovar Rissen Sequence Type 8877 isolated from a cracked table egg in Sudan. The whole-genome sequencing was obtained using Illumina Miseq platform. The quality of the sequenced read, the De novo assembly, and the sequencing typing was conducted by JEKESA pipeline (https://github.com/stanikae/jekesa). The assembled genome was also uploaded to the Center for Genomic Epidemiology web server to determine acquired antibiotic resistance genes, predict the serovar, and the antigenic profile. The genome of Salmonella enterica serovar Rissen 1-M1 was found to harbor 4,689 protein-coding genes, 96 RNA genes, and 115 pseudogenes, as predicted by NCBI Prokaryotic Genome Annotation Pipeline. This whole genome shotgun project has been deposited at DDBJ/ENA/GenBank under accession JAPSFB000000000. Elsevier 2023-02-23 /pmc/articles/PMC10006416/ /pubmed/36915641 http://dx.doi.org/10.1016/j.dib.2023.109005 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Elhassan, Mortada M.O. Adam, Habiba B.A. Fagir, Shaimaa S.A.O. Mohamed, Sofia B. Khaier, Mona A.M. Abdulaziz, Romisa Ismail, Arshad Allam, Mushal Whole-genome sequence data of a Salmonella enterica serovar Rissen sequence type 8877 isolated from cracked table egg in Sudan |
title | Whole-genome sequence data of a Salmonella enterica serovar Rissen sequence type 8877 isolated from cracked table egg in Sudan |
title_full | Whole-genome sequence data of a Salmonella enterica serovar Rissen sequence type 8877 isolated from cracked table egg in Sudan |
title_fullStr | Whole-genome sequence data of a Salmonella enterica serovar Rissen sequence type 8877 isolated from cracked table egg in Sudan |
title_full_unstemmed | Whole-genome sequence data of a Salmonella enterica serovar Rissen sequence type 8877 isolated from cracked table egg in Sudan |
title_short | Whole-genome sequence data of a Salmonella enterica serovar Rissen sequence type 8877 isolated from cracked table egg in Sudan |
title_sort | whole-genome sequence data of a salmonella enterica serovar rissen sequence type 8877 isolated from cracked table egg in sudan |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10006416/ https://www.ncbi.nlm.nih.gov/pubmed/36915641 http://dx.doi.org/10.1016/j.dib.2023.109005 |
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