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Whole-genome sequence data of a Salmonella enterica serovar Rissen sequence type 8877 isolated from cracked table egg in Sudan

Salmonella enterica serovar Rissen is an emerging and important Salmonella serovar prevalent in live animals and foods from retail markets worldwide. Here, we describe the whole-genome sequence of Salmonella enterica Serovar Rissen Sequence Type 8877 isolated from a cracked table egg in Sudan. The w...

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Autores principales: Elhassan, Mortada M.O., Adam, Habiba B.A., Fagir, Shaimaa S.A.O., Mohamed, Sofia B., Khaier, Mona A.M., Abdulaziz, Romisa, Ismail, Arshad, Allam, Mushal
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10006416/
https://www.ncbi.nlm.nih.gov/pubmed/36915641
http://dx.doi.org/10.1016/j.dib.2023.109005
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author Elhassan, Mortada M.O.
Adam, Habiba B.A.
Fagir, Shaimaa S.A.O.
Mohamed, Sofia B.
Khaier, Mona A.M.
Abdulaziz, Romisa
Ismail, Arshad
Allam, Mushal
author_facet Elhassan, Mortada M.O.
Adam, Habiba B.A.
Fagir, Shaimaa S.A.O.
Mohamed, Sofia B.
Khaier, Mona A.M.
Abdulaziz, Romisa
Ismail, Arshad
Allam, Mushal
author_sort Elhassan, Mortada M.O.
collection PubMed
description Salmonella enterica serovar Rissen is an emerging and important Salmonella serovar prevalent in live animals and foods from retail markets worldwide. Here, we describe the whole-genome sequence of Salmonella enterica Serovar Rissen Sequence Type 8877 isolated from a cracked table egg in Sudan. The whole-genome sequencing was obtained using Illumina Miseq platform. The quality of the sequenced read, the De novo assembly, and the sequencing typing was conducted by JEKESA pipeline (https://github.com/stanikae/jekesa). The assembled genome was also uploaded to the Center for Genomic Epidemiology web server to determine acquired antibiotic resistance genes, predict the serovar, and the antigenic profile. The genome of Salmonella enterica serovar Rissen 1-M1 was found to harbor 4,689 protein-coding genes, 96 RNA genes, and 115 pseudogenes, as predicted by NCBI Prokaryotic Genome Annotation Pipeline. This whole genome shotgun project has been deposited at DDBJ/ENA/GenBank under accession JAPSFB000000000.
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spelling pubmed-100064162023-03-12 Whole-genome sequence data of a Salmonella enterica serovar Rissen sequence type 8877 isolated from cracked table egg in Sudan Elhassan, Mortada M.O. Adam, Habiba B.A. Fagir, Shaimaa S.A.O. Mohamed, Sofia B. Khaier, Mona A.M. Abdulaziz, Romisa Ismail, Arshad Allam, Mushal Data Brief Data Article Salmonella enterica serovar Rissen is an emerging and important Salmonella serovar prevalent in live animals and foods from retail markets worldwide. Here, we describe the whole-genome sequence of Salmonella enterica Serovar Rissen Sequence Type 8877 isolated from a cracked table egg in Sudan. The whole-genome sequencing was obtained using Illumina Miseq platform. The quality of the sequenced read, the De novo assembly, and the sequencing typing was conducted by JEKESA pipeline (https://github.com/stanikae/jekesa). The assembled genome was also uploaded to the Center for Genomic Epidemiology web server to determine acquired antibiotic resistance genes, predict the serovar, and the antigenic profile. The genome of Salmonella enterica serovar Rissen 1-M1 was found to harbor 4,689 protein-coding genes, 96 RNA genes, and 115 pseudogenes, as predicted by NCBI Prokaryotic Genome Annotation Pipeline. This whole genome shotgun project has been deposited at DDBJ/ENA/GenBank under accession JAPSFB000000000. Elsevier 2023-02-23 /pmc/articles/PMC10006416/ /pubmed/36915641 http://dx.doi.org/10.1016/j.dib.2023.109005 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Elhassan, Mortada M.O.
Adam, Habiba B.A.
Fagir, Shaimaa S.A.O.
Mohamed, Sofia B.
Khaier, Mona A.M.
Abdulaziz, Romisa
Ismail, Arshad
Allam, Mushal
Whole-genome sequence data of a Salmonella enterica serovar Rissen sequence type 8877 isolated from cracked table egg in Sudan
title Whole-genome sequence data of a Salmonella enterica serovar Rissen sequence type 8877 isolated from cracked table egg in Sudan
title_full Whole-genome sequence data of a Salmonella enterica serovar Rissen sequence type 8877 isolated from cracked table egg in Sudan
title_fullStr Whole-genome sequence data of a Salmonella enterica serovar Rissen sequence type 8877 isolated from cracked table egg in Sudan
title_full_unstemmed Whole-genome sequence data of a Salmonella enterica serovar Rissen sequence type 8877 isolated from cracked table egg in Sudan
title_short Whole-genome sequence data of a Salmonella enterica serovar Rissen sequence type 8877 isolated from cracked table egg in Sudan
title_sort whole-genome sequence data of a salmonella enterica serovar rissen sequence type 8877 isolated from cracked table egg in sudan
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10006416/
https://www.ncbi.nlm.nih.gov/pubmed/36915641
http://dx.doi.org/10.1016/j.dib.2023.109005
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