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Deep Learning-Based Segmentation of 3D Volumetric Image and Microstructural Analysis

As a fundamental but difficult topic in computer vision, 3D object segmentation has various applications in medical image analysis, autonomous vehicles, robotics, virtual reality, lithium battery image analysis, etc. In the past, 3D segmentation was performed using hand-made features and design tech...

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Autores principales: Mahmud, Bahar Uddin, Hong, Guan Yue, Mamun, Abdullah Al, Ping, Em Poh, Wu, Qingliu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10007404/
https://www.ncbi.nlm.nih.gov/pubmed/36904845
http://dx.doi.org/10.3390/s23052640
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author Mahmud, Bahar Uddin
Hong, Guan Yue
Mamun, Abdullah Al
Ping, Em Poh
Wu, Qingliu
author_facet Mahmud, Bahar Uddin
Hong, Guan Yue
Mamun, Abdullah Al
Ping, Em Poh
Wu, Qingliu
author_sort Mahmud, Bahar Uddin
collection PubMed
description As a fundamental but difficult topic in computer vision, 3D object segmentation has various applications in medical image analysis, autonomous vehicles, robotics, virtual reality, lithium battery image analysis, etc. In the past, 3D segmentation was performed using hand-made features and design techniques, but these techniques could not generalize to vast amounts of data or reach acceptable accuracy. Deep learning techniques have lately emerged as the preferred method for 3D segmentation jobs as a result of their extraordinary performance in 2D computer vision. Our proposed method used a CNN-based architecture called 3D UNET, which is inspired by the famous 2D UNET that has been used to segment volumetric image data. To see the internal changes of composite materials, for instance, in a lithium battery image, it is necessary to see the flow of different materials and follow the directions analyzing the inside properties. In this paper, a combination of 3D UNET and VGG19 has been used to conduct a multiclass segmentation of publicly available sandstone datasets to analyze their microstructures using image data based on four different objects in the samples of volumetric data. In our image sample, there are a total of 448 2D images, which are then aggregated as one 3D volume to examine the 3D volumetric data. The solution involves the segmentation of each object in the volume data and further analysis of each object to find its average size, area percentage, total area, etc. The open-source image processing package IMAGEJ is used for further analysis of individual particles. In this study, it was demonstrated that convolutional neural networks can be trained to recognize sandstone microstructure traits with an accuracy of 96.78% and an IOU of 91.12%. According to our knowledge, many prior works have applied 3D UNET for segmentation, but very few papers extend it further to show the details of particles in the sample. The proposed solution offers a computational insight for real-time implementation and is discovered to be superior to the current state-of-the-art methods. The result has importance for the creation of an approximately similar model for the microstructural analysis of volumetric data.
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spelling pubmed-100074042023-03-12 Deep Learning-Based Segmentation of 3D Volumetric Image and Microstructural Analysis Mahmud, Bahar Uddin Hong, Guan Yue Mamun, Abdullah Al Ping, Em Poh Wu, Qingliu Sensors (Basel) Article As a fundamental but difficult topic in computer vision, 3D object segmentation has various applications in medical image analysis, autonomous vehicles, robotics, virtual reality, lithium battery image analysis, etc. In the past, 3D segmentation was performed using hand-made features and design techniques, but these techniques could not generalize to vast amounts of data or reach acceptable accuracy. Deep learning techniques have lately emerged as the preferred method for 3D segmentation jobs as a result of their extraordinary performance in 2D computer vision. Our proposed method used a CNN-based architecture called 3D UNET, which is inspired by the famous 2D UNET that has been used to segment volumetric image data. To see the internal changes of composite materials, for instance, in a lithium battery image, it is necessary to see the flow of different materials and follow the directions analyzing the inside properties. In this paper, a combination of 3D UNET and VGG19 has been used to conduct a multiclass segmentation of publicly available sandstone datasets to analyze their microstructures using image data based on four different objects in the samples of volumetric data. In our image sample, there are a total of 448 2D images, which are then aggregated as one 3D volume to examine the 3D volumetric data. The solution involves the segmentation of each object in the volume data and further analysis of each object to find its average size, area percentage, total area, etc. The open-source image processing package IMAGEJ is used for further analysis of individual particles. In this study, it was demonstrated that convolutional neural networks can be trained to recognize sandstone microstructure traits with an accuracy of 96.78% and an IOU of 91.12%. According to our knowledge, many prior works have applied 3D UNET for segmentation, but very few papers extend it further to show the details of particles in the sample. The proposed solution offers a computational insight for real-time implementation and is discovered to be superior to the current state-of-the-art methods. The result has importance for the creation of an approximately similar model for the microstructural analysis of volumetric data. MDPI 2023-02-27 /pmc/articles/PMC10007404/ /pubmed/36904845 http://dx.doi.org/10.3390/s23052640 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Mahmud, Bahar Uddin
Hong, Guan Yue
Mamun, Abdullah Al
Ping, Em Poh
Wu, Qingliu
Deep Learning-Based Segmentation of 3D Volumetric Image and Microstructural Analysis
title Deep Learning-Based Segmentation of 3D Volumetric Image and Microstructural Analysis
title_full Deep Learning-Based Segmentation of 3D Volumetric Image and Microstructural Analysis
title_fullStr Deep Learning-Based Segmentation of 3D Volumetric Image and Microstructural Analysis
title_full_unstemmed Deep Learning-Based Segmentation of 3D Volumetric Image and Microstructural Analysis
title_short Deep Learning-Based Segmentation of 3D Volumetric Image and Microstructural Analysis
title_sort deep learning-based segmentation of 3d volumetric image and microstructural analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10007404/
https://www.ncbi.nlm.nih.gov/pubmed/36904845
http://dx.doi.org/10.3390/s23052640
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