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Draft genome sequence of Enterobacter chengduensis ECC445, isolated from fresh water in the West Indies

OBJECTIVES: The Enterobacter cloacae complex is considered an important opportunistic pathogen. It comprises many members that remain difficult to delineate by phenotypic approaches. Despite its importance in human infection, there is a lack of information on associated members in other compartments...

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Autores principales: Pot, Matthieu, Ducat, Célia, Reynaud, Yann, Couvin, David, Ferdinand, Séverine, Breurec, Sébastien, Talarmin, Antoine, Guyomard-Rabenirina, Stéphanie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10007730/
https://www.ncbi.nlm.nih.gov/pubmed/36906565
http://dx.doi.org/10.1186/s12863-023-01116-7
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author Pot, Matthieu
Ducat, Célia
Reynaud, Yann
Couvin, David
Ferdinand, Séverine
Breurec, Sébastien
Talarmin, Antoine
Guyomard-Rabenirina, Stéphanie
author_facet Pot, Matthieu
Ducat, Célia
Reynaud, Yann
Couvin, David
Ferdinand, Séverine
Breurec, Sébastien
Talarmin, Antoine
Guyomard-Rabenirina, Stéphanie
author_sort Pot, Matthieu
collection PubMed
description OBJECTIVES: The Enterobacter cloacae complex is considered an important opportunistic pathogen. It comprises many members that remain difficult to delineate by phenotypic approaches. Despite its importance in human infection, there is a lack of information on associated members in other compartments. Here we report the first de novo assembled and annotated whole-genome sequence of a E. chengduensis strain isolated from the environment. DATA DESCRIPTION: ECC445 specimen was isolated in 2018 from a drinking water catchment point in Guadeloupe. It was clearly related to E. chengduensis species according to hsp60 typing and genomic comparison. Its whole-genome sequence is 5,211,280-bp long divided into 68 contigs, and presents a G + C content of 55.78%. This genome and associated datasets provided here will serve as a useful resource for further analyses of this rarely reported Enterobacter species.
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spelling pubmed-100077302023-03-12 Draft genome sequence of Enterobacter chengduensis ECC445, isolated from fresh water in the West Indies Pot, Matthieu Ducat, Célia Reynaud, Yann Couvin, David Ferdinand, Séverine Breurec, Sébastien Talarmin, Antoine Guyomard-Rabenirina, Stéphanie BMC Genom Data Data Note OBJECTIVES: The Enterobacter cloacae complex is considered an important opportunistic pathogen. It comprises many members that remain difficult to delineate by phenotypic approaches. Despite its importance in human infection, there is a lack of information on associated members in other compartments. Here we report the first de novo assembled and annotated whole-genome sequence of a E. chengduensis strain isolated from the environment. DATA DESCRIPTION: ECC445 specimen was isolated in 2018 from a drinking water catchment point in Guadeloupe. It was clearly related to E. chengduensis species according to hsp60 typing and genomic comparison. Its whole-genome sequence is 5,211,280-bp long divided into 68 contigs, and presents a G + C content of 55.78%. This genome and associated datasets provided here will serve as a useful resource for further analyses of this rarely reported Enterobacter species. BioMed Central 2023-03-11 /pmc/articles/PMC10007730/ /pubmed/36906565 http://dx.doi.org/10.1186/s12863-023-01116-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Data Note
Pot, Matthieu
Ducat, Célia
Reynaud, Yann
Couvin, David
Ferdinand, Séverine
Breurec, Sébastien
Talarmin, Antoine
Guyomard-Rabenirina, Stéphanie
Draft genome sequence of Enterobacter chengduensis ECC445, isolated from fresh water in the West Indies
title Draft genome sequence of Enterobacter chengduensis ECC445, isolated from fresh water in the West Indies
title_full Draft genome sequence of Enterobacter chengduensis ECC445, isolated from fresh water in the West Indies
title_fullStr Draft genome sequence of Enterobacter chengduensis ECC445, isolated from fresh water in the West Indies
title_full_unstemmed Draft genome sequence of Enterobacter chengduensis ECC445, isolated from fresh water in the West Indies
title_short Draft genome sequence of Enterobacter chengduensis ECC445, isolated from fresh water in the West Indies
title_sort draft genome sequence of enterobacter chengduensis ecc445, isolated from fresh water in the west indies
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10007730/
https://www.ncbi.nlm.nih.gov/pubmed/36906565
http://dx.doi.org/10.1186/s12863-023-01116-7
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