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De novo transcriptome assemblies of five major European oilseed rape insect pests
OBJECTIVE: Insect pests can cause severe losses in oilseed rape yields across Europe. Genomic and transcriptomic information is very limited for these insects. The aim of our study was to provide transcriptomic resources on several oilseed rape herbivores that will support research into their biolog...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10007812/ https://www.ncbi.nlm.nih.gov/pubmed/36899327 http://dx.doi.org/10.1186/s12863-023-01115-8 |
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author | Sana, Salma Vollhardt, Ines Kubon, Katharina Rostás, Michael Scholten, Stefan |
author_facet | Sana, Salma Vollhardt, Ines Kubon, Katharina Rostás, Michael Scholten, Stefan |
author_sort | Sana, Salma |
collection | PubMed |
description | OBJECTIVE: Insect pests can cause severe losses in oilseed rape yields across Europe. Genomic and transcriptomic information is very limited for these insects. The aim of our study was to provide transcriptomic resources on several oilseed rape herbivores that will support research into their biology and help develop new methods of sustainable pest management. DATA: Transcriptomes for larval stages of five major European pest species were de novo assembled by Trinity assembler. Total number of transcripts ranged from 112,247 for Ceutorhynchus pallidactylus to 225,110 for Ceutorhyncus napi. Intermediate numbers of 140,588, 140,998 and 144,504, were found for Psylliodes chrysocephala, Dasineura brassicae, and Brassicogethes aeneus, respectively. Bench-marking universal single-copy orthologues analyses for each dataset indicated high degree of completeness for all five species. The transcriptomes extend the list of genomic data on insect larvae that constitute major pests of oilseed rape. The data provide information on larval physiology and form a basis to develop highly specific RNA interference-based plant protection. |
format | Online Article Text |
id | pubmed-10007812 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-100078122023-03-12 De novo transcriptome assemblies of five major European oilseed rape insect pests Sana, Salma Vollhardt, Ines Kubon, Katharina Rostás, Michael Scholten, Stefan BMC Genom Data Data Note OBJECTIVE: Insect pests can cause severe losses in oilseed rape yields across Europe. Genomic and transcriptomic information is very limited for these insects. The aim of our study was to provide transcriptomic resources on several oilseed rape herbivores that will support research into their biology and help develop new methods of sustainable pest management. DATA: Transcriptomes for larval stages of five major European pest species were de novo assembled by Trinity assembler. Total number of transcripts ranged from 112,247 for Ceutorhynchus pallidactylus to 225,110 for Ceutorhyncus napi. Intermediate numbers of 140,588, 140,998 and 144,504, were found for Psylliodes chrysocephala, Dasineura brassicae, and Brassicogethes aeneus, respectively. Bench-marking universal single-copy orthologues analyses for each dataset indicated high degree of completeness for all five species. The transcriptomes extend the list of genomic data on insect larvae that constitute major pests of oilseed rape. The data provide information on larval physiology and form a basis to develop highly specific RNA interference-based plant protection. BioMed Central 2023-03-10 /pmc/articles/PMC10007812/ /pubmed/36899327 http://dx.doi.org/10.1186/s12863-023-01115-8 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Data Note Sana, Salma Vollhardt, Ines Kubon, Katharina Rostás, Michael Scholten, Stefan De novo transcriptome assemblies of five major European oilseed rape insect pests |
title | De novo transcriptome assemblies of five major European oilseed rape insect pests |
title_full | De novo transcriptome assemblies of five major European oilseed rape insect pests |
title_fullStr | De novo transcriptome assemblies of five major European oilseed rape insect pests |
title_full_unstemmed | De novo transcriptome assemblies of five major European oilseed rape insect pests |
title_short | De novo transcriptome assemblies of five major European oilseed rape insect pests |
title_sort | de novo transcriptome assemblies of five major european oilseed rape insect pests |
topic | Data Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10007812/ https://www.ncbi.nlm.nih.gov/pubmed/36899327 http://dx.doi.org/10.1186/s12863-023-01115-8 |
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