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Impact of the Error Structure on the Design and Analysis of Enzyme Kinetic Models

The statistical analysis of enzyme kinetic reactions usually involves models of the response functions which are well defined on the basis of Michaelis–Menten type equations. The error structure, however, is often without good reason assumed as additive Gaussian noise. This simple assumption may lea...

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Autores principales: Yousefi, Elham, Müller, Werner G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10008308/
https://www.ncbi.nlm.nih.gov/pubmed/36923259
http://dx.doi.org/10.1007/s12561-022-09347-5
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author Yousefi, Elham
Müller, Werner G.
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Müller, Werner G.
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description The statistical analysis of enzyme kinetic reactions usually involves models of the response functions which are well defined on the basis of Michaelis–Menten type equations. The error structure, however, is often without good reason assumed as additive Gaussian noise. This simple assumption may lead to undesired properties of the analysis, particularly when simulations are involved and consequently negative simulated reaction rates may occur. In this study, we investigate the effect of assuming multiplicative log normal errors instead. While there is typically little impact on the estimates, the experimental designs and their efficiencies are decisively affected, particularly when it comes to model discrimination problems.
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spelling pubmed-100083082023-03-13 Impact of the Error Structure on the Design and Analysis of Enzyme Kinetic Models Yousefi, Elham Müller, Werner G. Stat Biosci Article The statistical analysis of enzyme kinetic reactions usually involves models of the response functions which are well defined on the basis of Michaelis–Menten type equations. The error structure, however, is often without good reason assumed as additive Gaussian noise. This simple assumption may lead to undesired properties of the analysis, particularly when simulations are involved and consequently negative simulated reaction rates may occur. In this study, we investigate the effect of assuming multiplicative log normal errors instead. While there is typically little impact on the estimates, the experimental designs and their efficiencies are decisively affected, particularly when it comes to model discrimination problems. Springer US 2022-06-09 2023 /pmc/articles/PMC10008308/ /pubmed/36923259 http://dx.doi.org/10.1007/s12561-022-09347-5 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Yousefi, Elham
Müller, Werner G.
Impact of the Error Structure on the Design and Analysis of Enzyme Kinetic Models
title Impact of the Error Structure on the Design and Analysis of Enzyme Kinetic Models
title_full Impact of the Error Structure on the Design and Analysis of Enzyme Kinetic Models
title_fullStr Impact of the Error Structure on the Design and Analysis of Enzyme Kinetic Models
title_full_unstemmed Impact of the Error Structure on the Design and Analysis of Enzyme Kinetic Models
title_short Impact of the Error Structure on the Design and Analysis of Enzyme Kinetic Models
title_sort impact of the error structure on the design and analysis of enzyme kinetic models
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10008308/
https://www.ncbi.nlm.nih.gov/pubmed/36923259
http://dx.doi.org/10.1007/s12561-022-09347-5
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