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Impact of the Error Structure on the Design and Analysis of Enzyme Kinetic Models
The statistical analysis of enzyme kinetic reactions usually involves models of the response functions which are well defined on the basis of Michaelis–Menten type equations. The error structure, however, is often without good reason assumed as additive Gaussian noise. This simple assumption may lea...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10008308/ https://www.ncbi.nlm.nih.gov/pubmed/36923259 http://dx.doi.org/10.1007/s12561-022-09347-5 |
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author | Yousefi, Elham Müller, Werner G. |
author_facet | Yousefi, Elham Müller, Werner G. |
author_sort | Yousefi, Elham |
collection | PubMed |
description | The statistical analysis of enzyme kinetic reactions usually involves models of the response functions which are well defined on the basis of Michaelis–Menten type equations. The error structure, however, is often without good reason assumed as additive Gaussian noise. This simple assumption may lead to undesired properties of the analysis, particularly when simulations are involved and consequently negative simulated reaction rates may occur. In this study, we investigate the effect of assuming multiplicative log normal errors instead. While there is typically little impact on the estimates, the experimental designs and their efficiencies are decisively affected, particularly when it comes to model discrimination problems. |
format | Online Article Text |
id | pubmed-10008308 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-100083082023-03-13 Impact of the Error Structure on the Design and Analysis of Enzyme Kinetic Models Yousefi, Elham Müller, Werner G. Stat Biosci Article The statistical analysis of enzyme kinetic reactions usually involves models of the response functions which are well defined on the basis of Michaelis–Menten type equations. The error structure, however, is often without good reason assumed as additive Gaussian noise. This simple assumption may lead to undesired properties of the analysis, particularly when simulations are involved and consequently negative simulated reaction rates may occur. In this study, we investigate the effect of assuming multiplicative log normal errors instead. While there is typically little impact on the estimates, the experimental designs and their efficiencies are decisively affected, particularly when it comes to model discrimination problems. Springer US 2022-06-09 2023 /pmc/articles/PMC10008308/ /pubmed/36923259 http://dx.doi.org/10.1007/s12561-022-09347-5 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Yousefi, Elham Müller, Werner G. Impact of the Error Structure on the Design and Analysis of Enzyme Kinetic Models |
title | Impact of the Error Structure on the Design and Analysis of Enzyme Kinetic Models |
title_full | Impact of the Error Structure on the Design and Analysis of Enzyme Kinetic Models |
title_fullStr | Impact of the Error Structure on the Design and Analysis of Enzyme Kinetic Models |
title_full_unstemmed | Impact of the Error Structure on the Design and Analysis of Enzyme Kinetic Models |
title_short | Impact of the Error Structure on the Design and Analysis of Enzyme Kinetic Models |
title_sort | impact of the error structure on the design and analysis of enzyme kinetic models |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10008308/ https://www.ncbi.nlm.nih.gov/pubmed/36923259 http://dx.doi.org/10.1007/s12561-022-09347-5 |
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