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Open and reproducible neuroimaging: From study inception to publication

Empirical observations of how labs conduct research indicate that the adoption rate of open practices for transparent, reproducible, and collaborative science remains in its infancy. This is at odds with the overwhelming evidence for the necessity of these practices and their benefits for individual...

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Autores principales: Niso, Guiomar, Botvinik-Nezer, Rotem, Appelhoff, Stefan, De La Vega, Alejandro, Esteban, Oscar, Etzel, Joset A., Finc, Karolina, Ganz, Melanie, Gau, Rémi, Halchenko, Yaroslav O., Herholz, Peer, Karakuzu, Agah, Keator, David B., Markiewicz, Christopher J., Maumet, Camille, Pernet, Cyril R., Pestilli, Franco, Queder, Nazek, Schmitt, Tina, Sójka, Weronika, Wagner, Adina S., Whitaker, Kirstie J., Rieger, Jochem W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10008521/
https://www.ncbi.nlm.nih.gov/pubmed/36100172
http://dx.doi.org/10.1016/j.neuroimage.2022.119623
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author Niso, Guiomar
Botvinik-Nezer, Rotem
Appelhoff, Stefan
De La Vega, Alejandro
Esteban, Oscar
Etzel, Joset A.
Finc, Karolina
Ganz, Melanie
Gau, Rémi
Halchenko, Yaroslav O.
Herholz, Peer
Karakuzu, Agah
Keator, David B.
Markiewicz, Christopher J.
Maumet, Camille
Pernet, Cyril R.
Pestilli, Franco
Queder, Nazek
Schmitt, Tina
Sójka, Weronika
Wagner, Adina S.
Whitaker, Kirstie J.
Rieger, Jochem W.
author_facet Niso, Guiomar
Botvinik-Nezer, Rotem
Appelhoff, Stefan
De La Vega, Alejandro
Esteban, Oscar
Etzel, Joset A.
Finc, Karolina
Ganz, Melanie
Gau, Rémi
Halchenko, Yaroslav O.
Herholz, Peer
Karakuzu, Agah
Keator, David B.
Markiewicz, Christopher J.
Maumet, Camille
Pernet, Cyril R.
Pestilli, Franco
Queder, Nazek
Schmitt, Tina
Sójka, Weronika
Wagner, Adina S.
Whitaker, Kirstie J.
Rieger, Jochem W.
author_sort Niso, Guiomar
collection PubMed
description Empirical observations of how labs conduct research indicate that the adoption rate of open practices for transparent, reproducible, and collaborative science remains in its infancy. This is at odds with the overwhelming evidence for the necessity of these practices and their benefits for individual researchers, scientific progress, and society in general. To date, information required for implementing open science practices throughout the different steps of a research project is scattered among many different sources. Even experienced researchers in the topic find it hard to navigate the ecosystem of tools and to make sustainable choices. Here, we provide an integrated overview of community-developed resources that can support collaborative, open, reproducible, replicable, robust and generalizable neuroimaging throughout the entire research cycle from inception to publication and across different neuroimaging modalities. We review tools and practices supporting study inception and planning, data acquisition, research data management, data processing and analysis, and research dissemination. An online version of this resource can be found at https://oreoni.github.io. We believe it will prove helpful for researchers and institutions to make a successful and sustainable move towards open and reproducible science and to eventually take an active role in its future development.
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spelling pubmed-100085212023-05-05 Open and reproducible neuroimaging: From study inception to publication Niso, Guiomar Botvinik-Nezer, Rotem Appelhoff, Stefan De La Vega, Alejandro Esteban, Oscar Etzel, Joset A. Finc, Karolina Ganz, Melanie Gau, Rémi Halchenko, Yaroslav O. Herholz, Peer Karakuzu, Agah Keator, David B. Markiewicz, Christopher J. Maumet, Camille Pernet, Cyril R. Pestilli, Franco Queder, Nazek Schmitt, Tina Sójka, Weronika Wagner, Adina S. Whitaker, Kirstie J. Rieger, Jochem W. Neuroimage Article Empirical observations of how labs conduct research indicate that the adoption rate of open practices for transparent, reproducible, and collaborative science remains in its infancy. This is at odds with the overwhelming evidence for the necessity of these practices and their benefits for individual researchers, scientific progress, and society in general. To date, information required for implementing open science practices throughout the different steps of a research project is scattered among many different sources. Even experienced researchers in the topic find it hard to navigate the ecosystem of tools and to make sustainable choices. Here, we provide an integrated overview of community-developed resources that can support collaborative, open, reproducible, replicable, robust and generalizable neuroimaging throughout the entire research cycle from inception to publication and across different neuroimaging modalities. We review tools and practices supporting study inception and planning, data acquisition, research data management, data processing and analysis, and research dissemination. An online version of this resource can be found at https://oreoni.github.io. We believe it will prove helpful for researchers and institutions to make a successful and sustainable move towards open and reproducible science and to eventually take an active role in its future development. 2022-11 2022-09-12 /pmc/articles/PMC10008521/ /pubmed/36100172 http://dx.doi.org/10.1016/j.neuroimage.2022.119623 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) )
spellingShingle Article
Niso, Guiomar
Botvinik-Nezer, Rotem
Appelhoff, Stefan
De La Vega, Alejandro
Esteban, Oscar
Etzel, Joset A.
Finc, Karolina
Ganz, Melanie
Gau, Rémi
Halchenko, Yaroslav O.
Herholz, Peer
Karakuzu, Agah
Keator, David B.
Markiewicz, Christopher J.
Maumet, Camille
Pernet, Cyril R.
Pestilli, Franco
Queder, Nazek
Schmitt, Tina
Sójka, Weronika
Wagner, Adina S.
Whitaker, Kirstie J.
Rieger, Jochem W.
Open and reproducible neuroimaging: From study inception to publication
title Open and reproducible neuroimaging: From study inception to publication
title_full Open and reproducible neuroimaging: From study inception to publication
title_fullStr Open and reproducible neuroimaging: From study inception to publication
title_full_unstemmed Open and reproducible neuroimaging: From study inception to publication
title_short Open and reproducible neuroimaging: From study inception to publication
title_sort open and reproducible neuroimaging: from study inception to publication
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10008521/
https://www.ncbi.nlm.nih.gov/pubmed/36100172
http://dx.doi.org/10.1016/j.neuroimage.2022.119623
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