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Multi-ancestry genome-wide association analyses improve resolution of genes and pathways influencing lung function and chronic obstructive pulmonary disease risk

Lung-function impairment underlies chronic obstructive pulmonary disease (COPD) and predicts mortality. In the largest multi-ancestry genome-wide association meta-analysis of lung function to date, comprising 588,452 participants, we identified 1,020 independent association signals implicating 559 g...

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Autores principales: Shrine, Nick, Izquierdo, Abril G., Chen, Jing, Packer, Richard, Hall, Robert J., Guyatt, Anna L., Batini, Chiara, Thompson, Rebecca J., Pavuluri, Chandan, Malik, Vidhi, Hobbs, Brian D., Moll, Matthew, Kim, Wonji, Tal-Singer, Ruth, Bakke, Per, Fawcett, Katherine A., John, Catherine, Coley, Kayesha, Piga, Noemi Nicole, Pozarickij, Alfred, Lin, Kuang, Millwood, Iona Y., Chen, Zhengming, Li, Liming, Wijnant, Sara R. A., Lahousse, Lies, Brusselle, Guy, Uitterlinden, Andre G., Manichaikul, Ani, Oelsner, Elizabeth C., Rich, Stephen S., Barr, R. Graham, Kerr, Shona M., Vitart, Veronique, Brown, Michael R., Wielscher, Matthias, Imboden, Medea, Jeong, Ayoung, Bartz, Traci M., Gharib, Sina A., Flexeder, Claudia, Karrasch, Stefan, Gieger, Christian, Peters, Annette, Stubbe, Beate, Hu, Xiaowei, Ortega, Victor E., Meyers, Deborah A., Bleecker, Eugene R., Gabriel, Stacey B., Gupta, Namrata, Smith, Albert Vernon, Luan, Jian’an, Zhao, Jing-Hua, Hansen, Ailin F., Langhammer, Arnulf, Willer, Cristen, Bhatta, Laxmi, Porteous, David, Smith, Blair H., Campbell, Archie, Sofer, Tamar, Lee, Jiwon, Daviglus, Martha L., Yu, Bing, Lim, Elise, Xu, Hanfei, O’Connor, George T., Thareja, Gaurav, Albagha, Omar M. E., Suhre, Karsten, Granell, Raquel, Faquih, Tariq O., Hiemstra, Pieter S., Slats, Annelies M., Mullin, Benjamin H., Hui, Jennie, James, Alan, Beilby, John, Patasova, Karina, Hysi, Pirro, Koskela, Jukka T., Wyss, Annah B., Jin, Jianping, Sikdar, Sinjini, Lee, Mikyeong, May-Wilson, Sebastian, Pirastu, Nicola, Kentistou, Katherine A., Joshi, Peter K., Timmers, Paul R. H. J., Williams, Alexander T., Free, Robert C., Wang, Xueyang, Morrison, John L., Gilliland, Frank D., Chen, Zhanghua, Wang, Carol A., Foong, Rachel E., Harris, Sarah E., Taylor, Adele, Redmond, Paul, Cook, James P., Mahajan, Anubha, Lind, Lars, Palviainen, Teemu, Lehtimäki, Terho, Raitakari, Olli T., Kaprio, Jaakko, Rantanen, Taina, Pietiläinen, Kirsi H., Cox, Simon R., Pennell, Craig E., Hall, Graham L., Gauderman, W. James, Brightling, Chris, Wilson, James F., Vasankari, Tuula, Laitinen, Tarja, Salomaa, Veikko, Mook-Kanamori, Dennis O., Timpson, Nicholas J., Zeggini, Eleftheria, Dupuis, Josée, Hayward, Caroline, Brumpton, Ben, Langenberg, Claudia, Weiss, Stefan, Homuth, Georg, Schmidt, Carsten Oliver, Probst-Hensch, Nicole, Jarvelin, Marjo-Riitta, Morrison, Alanna C., Polasek, Ozren, Rudan, Igor, Lee, Joo-Hyeon, Sayers, Ian, Rawlins, Emma L., Dudbridge, Frank, Silverman, Edwin K., Strachan, David P., Walters, Robin G., Morris, Andrew P., London, Stephanie J., Cho, Michael H., Wain, Louise V., Hall, Ian P., Tobin, Martin D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group US 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10011137/
https://www.ncbi.nlm.nih.gov/pubmed/36914875
http://dx.doi.org/10.1038/s41588-023-01314-0
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author Shrine, Nick
Izquierdo, Abril G.
Chen, Jing
Packer, Richard
Hall, Robert J.
Guyatt, Anna L.
Batini, Chiara
Thompson, Rebecca J.
Pavuluri, Chandan
Malik, Vidhi
Hobbs, Brian D.
Moll, Matthew
Kim, Wonji
Tal-Singer, Ruth
Bakke, Per
Fawcett, Katherine A.
John, Catherine
Coley, Kayesha
Piga, Noemi Nicole
Pozarickij, Alfred
Lin, Kuang
Millwood, Iona Y.
Chen, Zhengming
Li, Liming
Wijnant, Sara R. A.
Lahousse, Lies
Brusselle, Guy
Uitterlinden, Andre G.
Manichaikul, Ani
Oelsner, Elizabeth C.
Rich, Stephen S.
Barr, R. Graham
Kerr, Shona M.
Vitart, Veronique
Brown, Michael R.
Wielscher, Matthias
Imboden, Medea
Jeong, Ayoung
Bartz, Traci M.
Gharib, Sina A.
Flexeder, Claudia
Karrasch, Stefan
Gieger, Christian
Peters, Annette
Stubbe, Beate
Hu, Xiaowei
Ortega, Victor E.
Meyers, Deborah A.
Bleecker, Eugene R.
Gabriel, Stacey B.
Gupta, Namrata
Smith, Albert Vernon
Luan, Jian’an
Zhao, Jing-Hua
Hansen, Ailin F.
Langhammer, Arnulf
Willer, Cristen
Bhatta, Laxmi
Porteous, David
Smith, Blair H.
Campbell, Archie
Sofer, Tamar
Lee, Jiwon
Daviglus, Martha L.
Yu, Bing
Lim, Elise
Xu, Hanfei
O’Connor, George T.
Thareja, Gaurav
Albagha, Omar M. E.
Suhre, Karsten
Granell, Raquel
Faquih, Tariq O.
Hiemstra, Pieter S.
Slats, Annelies M.
Mullin, Benjamin H.
Hui, Jennie
James, Alan
Beilby, John
Patasova, Karina
Hysi, Pirro
Koskela, Jukka T.
Wyss, Annah B.
Jin, Jianping
Sikdar, Sinjini
Lee, Mikyeong
May-Wilson, Sebastian
Pirastu, Nicola
Kentistou, Katherine A.
Joshi, Peter K.
Timmers, Paul R. H. J.
Williams, Alexander T.
Free, Robert C.
Wang, Xueyang
Morrison, John L.
Gilliland, Frank D.
Chen, Zhanghua
Wang, Carol A.
Foong, Rachel E.
Harris, Sarah E.
Taylor, Adele
Redmond, Paul
Cook, James P.
Mahajan, Anubha
Lind, Lars
Palviainen, Teemu
Lehtimäki, Terho
Raitakari, Olli T.
Kaprio, Jaakko
Rantanen, Taina
Pietiläinen, Kirsi H.
Cox, Simon R.
Pennell, Craig E.
Hall, Graham L.
Gauderman, W. James
Brightling, Chris
Wilson, James F.
Vasankari, Tuula
Laitinen, Tarja
Salomaa, Veikko
Mook-Kanamori, Dennis O.
Timpson, Nicholas J.
Zeggini, Eleftheria
Dupuis, Josée
Hayward, Caroline
Brumpton, Ben
Langenberg, Claudia
Weiss, Stefan
Homuth, Georg
Schmidt, Carsten Oliver
Probst-Hensch, Nicole
Jarvelin, Marjo-Riitta
Morrison, Alanna C.
Polasek, Ozren
Rudan, Igor
Lee, Joo-Hyeon
Sayers, Ian
Rawlins, Emma L.
Dudbridge, Frank
Silverman, Edwin K.
Strachan, David P.
Walters, Robin G.
Morris, Andrew P.
London, Stephanie J.
Cho, Michael H.
Wain, Louise V.
Hall, Ian P.
Tobin, Martin D.
author_facet Shrine, Nick
Izquierdo, Abril G.
Chen, Jing
Packer, Richard
Hall, Robert J.
Guyatt, Anna L.
Batini, Chiara
Thompson, Rebecca J.
Pavuluri, Chandan
Malik, Vidhi
Hobbs, Brian D.
Moll, Matthew
Kim, Wonji
Tal-Singer, Ruth
Bakke, Per
Fawcett, Katherine A.
John, Catherine
Coley, Kayesha
Piga, Noemi Nicole
Pozarickij, Alfred
Lin, Kuang
Millwood, Iona Y.
Chen, Zhengming
Li, Liming
Wijnant, Sara R. A.
Lahousse, Lies
Brusselle, Guy
Uitterlinden, Andre G.
Manichaikul, Ani
Oelsner, Elizabeth C.
Rich, Stephen S.
Barr, R. Graham
Kerr, Shona M.
Vitart, Veronique
Brown, Michael R.
Wielscher, Matthias
Imboden, Medea
Jeong, Ayoung
Bartz, Traci M.
Gharib, Sina A.
Flexeder, Claudia
Karrasch, Stefan
Gieger, Christian
Peters, Annette
Stubbe, Beate
Hu, Xiaowei
Ortega, Victor E.
Meyers, Deborah A.
Bleecker, Eugene R.
Gabriel, Stacey B.
Gupta, Namrata
Smith, Albert Vernon
Luan, Jian’an
Zhao, Jing-Hua
Hansen, Ailin F.
Langhammer, Arnulf
Willer, Cristen
Bhatta, Laxmi
Porteous, David
Smith, Blair H.
Campbell, Archie
Sofer, Tamar
Lee, Jiwon
Daviglus, Martha L.
Yu, Bing
Lim, Elise
Xu, Hanfei
O’Connor, George T.
Thareja, Gaurav
Albagha, Omar M. E.
Suhre, Karsten
Granell, Raquel
Faquih, Tariq O.
Hiemstra, Pieter S.
Slats, Annelies M.
Mullin, Benjamin H.
Hui, Jennie
James, Alan
Beilby, John
Patasova, Karina
Hysi, Pirro
Koskela, Jukka T.
Wyss, Annah B.
Jin, Jianping
Sikdar, Sinjini
Lee, Mikyeong
May-Wilson, Sebastian
Pirastu, Nicola
Kentistou, Katherine A.
Joshi, Peter K.
Timmers, Paul R. H. J.
Williams, Alexander T.
Free, Robert C.
Wang, Xueyang
Morrison, John L.
Gilliland, Frank D.
Chen, Zhanghua
Wang, Carol A.
Foong, Rachel E.
Harris, Sarah E.
Taylor, Adele
Redmond, Paul
Cook, James P.
Mahajan, Anubha
Lind, Lars
Palviainen, Teemu
Lehtimäki, Terho
Raitakari, Olli T.
Kaprio, Jaakko
Rantanen, Taina
Pietiläinen, Kirsi H.
Cox, Simon R.
Pennell, Craig E.
Hall, Graham L.
Gauderman, W. James
Brightling, Chris
Wilson, James F.
Vasankari, Tuula
Laitinen, Tarja
Salomaa, Veikko
Mook-Kanamori, Dennis O.
Timpson, Nicholas J.
Zeggini, Eleftheria
Dupuis, Josée
Hayward, Caroline
Brumpton, Ben
Langenberg, Claudia
Weiss, Stefan
Homuth, Georg
Schmidt, Carsten Oliver
Probst-Hensch, Nicole
Jarvelin, Marjo-Riitta
Morrison, Alanna C.
Polasek, Ozren
Rudan, Igor
Lee, Joo-Hyeon
Sayers, Ian
Rawlins, Emma L.
Dudbridge, Frank
Silverman, Edwin K.
Strachan, David P.
Walters, Robin G.
Morris, Andrew P.
London, Stephanie J.
Cho, Michael H.
Wain, Louise V.
Hall, Ian P.
Tobin, Martin D.
author_sort Shrine, Nick
collection PubMed
description Lung-function impairment underlies chronic obstructive pulmonary disease (COPD) and predicts mortality. In the largest multi-ancestry genome-wide association meta-analysis of lung function to date, comprising 588,452 participants, we identified 1,020 independent association signals implicating 559 genes supported by ≥2 criteria from a systematic variant-to-gene mapping framework. These genes were enriched in 29 pathways. Individual variants showed heterogeneity across ancestries, age and smoking groups, and collectively as a genetic risk score showed strong association with COPD across ancestry groups. We undertook phenome-wide association studies for selected associated variants as well as trait and pathway-specific genetic risk scores to infer possible consequences of intervening in pathways underlying lung function. We highlight new putative causal variants, genes, proteins and pathways, including those targeted by existing drugs. These findings bring us closer to understanding the mechanisms underlying lung function and COPD, and should inform functional genomics experiments and potentially future COPD therapies.
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spelling pubmed-100111372023-03-15 Multi-ancestry genome-wide association analyses improve resolution of genes and pathways influencing lung function and chronic obstructive pulmonary disease risk Shrine, Nick Izquierdo, Abril G. Chen, Jing Packer, Richard Hall, Robert J. Guyatt, Anna L. Batini, Chiara Thompson, Rebecca J. Pavuluri, Chandan Malik, Vidhi Hobbs, Brian D. Moll, Matthew Kim, Wonji Tal-Singer, Ruth Bakke, Per Fawcett, Katherine A. John, Catherine Coley, Kayesha Piga, Noemi Nicole Pozarickij, Alfred Lin, Kuang Millwood, Iona Y. Chen, Zhengming Li, Liming Wijnant, Sara R. A. Lahousse, Lies Brusselle, Guy Uitterlinden, Andre G. Manichaikul, Ani Oelsner, Elizabeth C. Rich, Stephen S. Barr, R. Graham Kerr, Shona M. Vitart, Veronique Brown, Michael R. Wielscher, Matthias Imboden, Medea Jeong, Ayoung Bartz, Traci M. Gharib, Sina A. Flexeder, Claudia Karrasch, Stefan Gieger, Christian Peters, Annette Stubbe, Beate Hu, Xiaowei Ortega, Victor E. Meyers, Deborah A. Bleecker, Eugene R. Gabriel, Stacey B. Gupta, Namrata Smith, Albert Vernon Luan, Jian’an Zhao, Jing-Hua Hansen, Ailin F. Langhammer, Arnulf Willer, Cristen Bhatta, Laxmi Porteous, David Smith, Blair H. Campbell, Archie Sofer, Tamar Lee, Jiwon Daviglus, Martha L. Yu, Bing Lim, Elise Xu, Hanfei O’Connor, George T. Thareja, Gaurav Albagha, Omar M. E. Suhre, Karsten Granell, Raquel Faquih, Tariq O. Hiemstra, Pieter S. Slats, Annelies M. Mullin, Benjamin H. Hui, Jennie James, Alan Beilby, John Patasova, Karina Hysi, Pirro Koskela, Jukka T. Wyss, Annah B. Jin, Jianping Sikdar, Sinjini Lee, Mikyeong May-Wilson, Sebastian Pirastu, Nicola Kentistou, Katherine A. Joshi, Peter K. Timmers, Paul R. H. J. Williams, Alexander T. Free, Robert C. Wang, Xueyang Morrison, John L. Gilliland, Frank D. Chen, Zhanghua Wang, Carol A. Foong, Rachel E. Harris, Sarah E. Taylor, Adele Redmond, Paul Cook, James P. Mahajan, Anubha Lind, Lars Palviainen, Teemu Lehtimäki, Terho Raitakari, Olli T. Kaprio, Jaakko Rantanen, Taina Pietiläinen, Kirsi H. Cox, Simon R. Pennell, Craig E. Hall, Graham L. Gauderman, W. James Brightling, Chris Wilson, James F. Vasankari, Tuula Laitinen, Tarja Salomaa, Veikko Mook-Kanamori, Dennis O. Timpson, Nicholas J. Zeggini, Eleftheria Dupuis, Josée Hayward, Caroline Brumpton, Ben Langenberg, Claudia Weiss, Stefan Homuth, Georg Schmidt, Carsten Oliver Probst-Hensch, Nicole Jarvelin, Marjo-Riitta Morrison, Alanna C. Polasek, Ozren Rudan, Igor Lee, Joo-Hyeon Sayers, Ian Rawlins, Emma L. Dudbridge, Frank Silverman, Edwin K. Strachan, David P. Walters, Robin G. Morris, Andrew P. London, Stephanie J. Cho, Michael H. Wain, Louise V. Hall, Ian P. Tobin, Martin D. Nat Genet Article Lung-function impairment underlies chronic obstructive pulmonary disease (COPD) and predicts mortality. In the largest multi-ancestry genome-wide association meta-analysis of lung function to date, comprising 588,452 participants, we identified 1,020 independent association signals implicating 559 genes supported by ≥2 criteria from a systematic variant-to-gene mapping framework. These genes were enriched in 29 pathways. Individual variants showed heterogeneity across ancestries, age and smoking groups, and collectively as a genetic risk score showed strong association with COPD across ancestry groups. We undertook phenome-wide association studies for selected associated variants as well as trait and pathway-specific genetic risk scores to infer possible consequences of intervening in pathways underlying lung function. We highlight new putative causal variants, genes, proteins and pathways, including those targeted by existing drugs. These findings bring us closer to understanding the mechanisms underlying lung function and COPD, and should inform functional genomics experiments and potentially future COPD therapies. Nature Publishing Group US 2023-03-13 2023 /pmc/articles/PMC10011137/ /pubmed/36914875 http://dx.doi.org/10.1038/s41588-023-01314-0 Text en © The Author(s) 2023, corrected publication 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Shrine, Nick
Izquierdo, Abril G.
Chen, Jing
Packer, Richard
Hall, Robert J.
Guyatt, Anna L.
Batini, Chiara
Thompson, Rebecca J.
Pavuluri, Chandan
Malik, Vidhi
Hobbs, Brian D.
Moll, Matthew
Kim, Wonji
Tal-Singer, Ruth
Bakke, Per
Fawcett, Katherine A.
John, Catherine
Coley, Kayesha
Piga, Noemi Nicole
Pozarickij, Alfred
Lin, Kuang
Millwood, Iona Y.
Chen, Zhengming
Li, Liming
Wijnant, Sara R. A.
Lahousse, Lies
Brusselle, Guy
Uitterlinden, Andre G.
Manichaikul, Ani
Oelsner, Elizabeth C.
Rich, Stephen S.
Barr, R. Graham
Kerr, Shona M.
Vitart, Veronique
Brown, Michael R.
Wielscher, Matthias
Imboden, Medea
Jeong, Ayoung
Bartz, Traci M.
Gharib, Sina A.
Flexeder, Claudia
Karrasch, Stefan
Gieger, Christian
Peters, Annette
Stubbe, Beate
Hu, Xiaowei
Ortega, Victor E.
Meyers, Deborah A.
Bleecker, Eugene R.
Gabriel, Stacey B.
Gupta, Namrata
Smith, Albert Vernon
Luan, Jian’an
Zhao, Jing-Hua
Hansen, Ailin F.
Langhammer, Arnulf
Willer, Cristen
Bhatta, Laxmi
Porteous, David
Smith, Blair H.
Campbell, Archie
Sofer, Tamar
Lee, Jiwon
Daviglus, Martha L.
Yu, Bing
Lim, Elise
Xu, Hanfei
O’Connor, George T.
Thareja, Gaurav
Albagha, Omar M. E.
Suhre, Karsten
Granell, Raquel
Faquih, Tariq O.
Hiemstra, Pieter S.
Slats, Annelies M.
Mullin, Benjamin H.
Hui, Jennie
James, Alan
Beilby, John
Patasova, Karina
Hysi, Pirro
Koskela, Jukka T.
Wyss, Annah B.
Jin, Jianping
Sikdar, Sinjini
Lee, Mikyeong
May-Wilson, Sebastian
Pirastu, Nicola
Kentistou, Katherine A.
Joshi, Peter K.
Timmers, Paul R. H. J.
Williams, Alexander T.
Free, Robert C.
Wang, Xueyang
Morrison, John L.
Gilliland, Frank D.
Chen, Zhanghua
Wang, Carol A.
Foong, Rachel E.
Harris, Sarah E.
Taylor, Adele
Redmond, Paul
Cook, James P.
Mahajan, Anubha
Lind, Lars
Palviainen, Teemu
Lehtimäki, Terho
Raitakari, Olli T.
Kaprio, Jaakko
Rantanen, Taina
Pietiläinen, Kirsi H.
Cox, Simon R.
Pennell, Craig E.
Hall, Graham L.
Gauderman, W. James
Brightling, Chris
Wilson, James F.
Vasankari, Tuula
Laitinen, Tarja
Salomaa, Veikko
Mook-Kanamori, Dennis O.
Timpson, Nicholas J.
Zeggini, Eleftheria
Dupuis, Josée
Hayward, Caroline
Brumpton, Ben
Langenberg, Claudia
Weiss, Stefan
Homuth, Georg
Schmidt, Carsten Oliver
Probst-Hensch, Nicole
Jarvelin, Marjo-Riitta
Morrison, Alanna C.
Polasek, Ozren
Rudan, Igor
Lee, Joo-Hyeon
Sayers, Ian
Rawlins, Emma L.
Dudbridge, Frank
Silverman, Edwin K.
Strachan, David P.
Walters, Robin G.
Morris, Andrew P.
London, Stephanie J.
Cho, Michael H.
Wain, Louise V.
Hall, Ian P.
Tobin, Martin D.
Multi-ancestry genome-wide association analyses improve resolution of genes and pathways influencing lung function and chronic obstructive pulmonary disease risk
title Multi-ancestry genome-wide association analyses improve resolution of genes and pathways influencing lung function and chronic obstructive pulmonary disease risk
title_full Multi-ancestry genome-wide association analyses improve resolution of genes and pathways influencing lung function and chronic obstructive pulmonary disease risk
title_fullStr Multi-ancestry genome-wide association analyses improve resolution of genes and pathways influencing lung function and chronic obstructive pulmonary disease risk
title_full_unstemmed Multi-ancestry genome-wide association analyses improve resolution of genes and pathways influencing lung function and chronic obstructive pulmonary disease risk
title_short Multi-ancestry genome-wide association analyses improve resolution of genes and pathways influencing lung function and chronic obstructive pulmonary disease risk
title_sort multi-ancestry genome-wide association analyses improve resolution of genes and pathways influencing lung function and chronic obstructive pulmonary disease risk
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10011137/
https://www.ncbi.nlm.nih.gov/pubmed/36914875
http://dx.doi.org/10.1038/s41588-023-01314-0
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