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DigEST: Digital plug‐n‐probe disease Endotyping Sensor Technology

In this work, we propose a novel diagnostic workflow—DigEST—that will enable stratification of disease states based on severity using multiplexed point of care (POC) biosensors. This work can boost the performance of current POC tests by enabling clear, digestible, and actionable diagnoses to the en...

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Detalles Bibliográficos
Autores principales: Ganguly, Antra, Ebrahimzadeh, Tahmineh, Komarovsky, Jessica, Zimmern, Philippe E., De Nisco, Nicole J., Prasad, Shalini
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10013760/
http://dx.doi.org/10.1002/btm2.10437
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author Ganguly, Antra
Ebrahimzadeh, Tahmineh
Komarovsky, Jessica
Zimmern, Philippe E.
De Nisco, Nicole J.
Prasad, Shalini
author_facet Ganguly, Antra
Ebrahimzadeh, Tahmineh
Komarovsky, Jessica
Zimmern, Philippe E.
De Nisco, Nicole J.
Prasad, Shalini
author_sort Ganguly, Antra
collection PubMed
description In this work, we propose a novel diagnostic workflow—DigEST—that will enable stratification of disease states based on severity using multiplexed point of care (POC) biosensors. This work can boost the performance of current POC tests by enabling clear, digestible, and actionable diagnoses to the end user. The scheme can be applied to any disease model, which requires time‐critical disease stratification for personalized treatment. Here, urinary tract infection is explored as the proof‐of‐concept disease model and a four‐class classification of disease severity is discussed. Our method is superior to traditional enzyme‐linked immunosorbent assay (ELISA) as it is faster and can work with multiple disease biomarkers and categorize diseases by endotypes (or disease subtype) and severity. To map the nonlinear nature of biochemical pathways of complex diseases, the method utilizes an established supervised machine learning model for digital classification. This scheme can potentially boost the diagnostic power of current electrochemical biosensors for better precision therapy and improved patient outcomes.
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spelling pubmed-100137602023-03-15 DigEST: Digital plug‐n‐probe disease Endotyping Sensor Technology Ganguly, Antra Ebrahimzadeh, Tahmineh Komarovsky, Jessica Zimmern, Philippe E. De Nisco, Nicole J. Prasad, Shalini Bioeng Transl Med Research Articles In this work, we propose a novel diagnostic workflow—DigEST—that will enable stratification of disease states based on severity using multiplexed point of care (POC) biosensors. This work can boost the performance of current POC tests by enabling clear, digestible, and actionable diagnoses to the end user. The scheme can be applied to any disease model, which requires time‐critical disease stratification for personalized treatment. Here, urinary tract infection is explored as the proof‐of‐concept disease model and a four‐class classification of disease severity is discussed. Our method is superior to traditional enzyme‐linked immunosorbent assay (ELISA) as it is faster and can work with multiple disease biomarkers and categorize diseases by endotypes (or disease subtype) and severity. To map the nonlinear nature of biochemical pathways of complex diseases, the method utilizes an established supervised machine learning model for digital classification. This scheme can potentially boost the diagnostic power of current electrochemical biosensors for better precision therapy and improved patient outcomes. John Wiley & Sons, Inc. 2022-11-05 /pmc/articles/PMC10013760/ http://dx.doi.org/10.1002/btm2.10437 Text en © 2022 The Authors. Bioengineering & Translational Medicine published by Wiley Periodicals LLC on behalf of American Institute of Chemical Engineers. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Ganguly, Antra
Ebrahimzadeh, Tahmineh
Komarovsky, Jessica
Zimmern, Philippe E.
De Nisco, Nicole J.
Prasad, Shalini
DigEST: Digital plug‐n‐probe disease Endotyping Sensor Technology
title DigEST: Digital plug‐n‐probe disease Endotyping Sensor Technology
title_full DigEST: Digital plug‐n‐probe disease Endotyping Sensor Technology
title_fullStr DigEST: Digital plug‐n‐probe disease Endotyping Sensor Technology
title_full_unstemmed DigEST: Digital plug‐n‐probe disease Endotyping Sensor Technology
title_short DigEST: Digital plug‐n‐probe disease Endotyping Sensor Technology
title_sort digest: digital plug‐n‐probe disease endotyping sensor technology
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10013760/
http://dx.doi.org/10.1002/btm2.10437
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