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Recommended practices and ethical considerations for natural language processing‐assisted observational research: A scoping review

An increasing number of studies have reported using natural language processing (NLP) to assist observational research by extracting clinical information from electronic health records (EHRs). Currently, no standardized reporting guidelines for NLP‐assisted observational studies exist. The absence o...

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Autores principales: Fu, Sunyang, Wang, Liwei, Moon, Sungrim, Zong, Nansu, He, Huan, Pejaver, Vikas, Relevo, Rose, Walden, Anita, Haendel, Melissa, Chute, Christopher G., Liu, Hongfang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10014687/
https://www.ncbi.nlm.nih.gov/pubmed/36478394
http://dx.doi.org/10.1111/cts.13463
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author Fu, Sunyang
Wang, Liwei
Moon, Sungrim
Zong, Nansu
He, Huan
Pejaver, Vikas
Relevo, Rose
Walden, Anita
Haendel, Melissa
Chute, Christopher G.
Liu, Hongfang
author_facet Fu, Sunyang
Wang, Liwei
Moon, Sungrim
Zong, Nansu
He, Huan
Pejaver, Vikas
Relevo, Rose
Walden, Anita
Haendel, Melissa
Chute, Christopher G.
Liu, Hongfang
author_sort Fu, Sunyang
collection PubMed
description An increasing number of studies have reported using natural language processing (NLP) to assist observational research by extracting clinical information from electronic health records (EHRs). Currently, no standardized reporting guidelines for NLP‐assisted observational studies exist. The absence of detailed reporting guidelines may create ambiguity in the use of NLP‐derived content, knowledge gaps in the current research reporting practices, and reproducibility challenges. To address these issues, we conducted a scoping review of NLP‐assisted observational clinical studies and examined their reporting practices, focusing on NLP methodology and evaluation. Through our investigation, we discovered a high variation regarding the reporting practices, such as inconsistent use of references for measurement studies, variation in the reporting location (reference, appendix, and manuscript), and different granularity of NLP methodology and evaluation details. To promote the wide adoption and utilization of NLP solutions in clinical research, we outline several perspectives that align with the six principles released by the World Health Organization (WHO) that guide the ethical use of artificial intelligence for health.
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spelling pubmed-100146872023-03-16 Recommended practices and ethical considerations for natural language processing‐assisted observational research: A scoping review Fu, Sunyang Wang, Liwei Moon, Sungrim Zong, Nansu He, Huan Pejaver, Vikas Relevo, Rose Walden, Anita Haendel, Melissa Chute, Christopher G. Liu, Hongfang Clin Transl Sci Reviews An increasing number of studies have reported using natural language processing (NLP) to assist observational research by extracting clinical information from electronic health records (EHRs). Currently, no standardized reporting guidelines for NLP‐assisted observational studies exist. The absence of detailed reporting guidelines may create ambiguity in the use of NLP‐derived content, knowledge gaps in the current research reporting practices, and reproducibility challenges. To address these issues, we conducted a scoping review of NLP‐assisted observational clinical studies and examined their reporting practices, focusing on NLP methodology and evaluation. Through our investigation, we discovered a high variation regarding the reporting practices, such as inconsistent use of references for measurement studies, variation in the reporting location (reference, appendix, and manuscript), and different granularity of NLP methodology and evaluation details. To promote the wide adoption and utilization of NLP solutions in clinical research, we outline several perspectives that align with the six principles released by the World Health Organization (WHO) that guide the ethical use of artificial intelligence for health. John Wiley and Sons Inc. 2022-12-26 /pmc/articles/PMC10014687/ /pubmed/36478394 http://dx.doi.org/10.1111/cts.13463 Text en © 2022 The Authors. Clinical and Translational Science published by Wiley Periodicals LLC on behalf of American Society for Clinical Pharmacology and Therapeutics. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Reviews
Fu, Sunyang
Wang, Liwei
Moon, Sungrim
Zong, Nansu
He, Huan
Pejaver, Vikas
Relevo, Rose
Walden, Anita
Haendel, Melissa
Chute, Christopher G.
Liu, Hongfang
Recommended practices and ethical considerations for natural language processing‐assisted observational research: A scoping review
title Recommended practices and ethical considerations for natural language processing‐assisted observational research: A scoping review
title_full Recommended practices and ethical considerations for natural language processing‐assisted observational research: A scoping review
title_fullStr Recommended practices and ethical considerations for natural language processing‐assisted observational research: A scoping review
title_full_unstemmed Recommended practices and ethical considerations for natural language processing‐assisted observational research: A scoping review
title_short Recommended practices and ethical considerations for natural language processing‐assisted observational research: A scoping review
title_sort recommended practices and ethical considerations for natural language processing‐assisted observational research: a scoping review
topic Reviews
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10014687/
https://www.ncbi.nlm.nih.gov/pubmed/36478394
http://dx.doi.org/10.1111/cts.13463
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