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A DNA barcode reference library for CITES listed Malagasy Dalbergia species

On Madagascar, the illegal and unsustainable exploitation and illegal international trade of Dalbergia (rosewood) precious woods remain a serious conservation problem. Members of this genus are at high risk of extinction as a consequence of logging, mining, and slash and burn agriculture. Morphologi...

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Autores principales: Rakotonirina, Tahinarizaka Jenny, Viljoen, Erika, Rakotonirina, Antso Harimanantsoa, Leong Pock Tsy, Jean Michel, Radanielina, Tendro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10015365/
https://www.ncbi.nlm.nih.gov/pubmed/36937058
http://dx.doi.org/10.1002/ece3.9887
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author Rakotonirina, Tahinarizaka Jenny
Viljoen, Erika
Rakotonirina, Antso Harimanantsoa
Leong Pock Tsy, Jean Michel
Radanielina, Tendro
author_facet Rakotonirina, Tahinarizaka Jenny
Viljoen, Erika
Rakotonirina, Antso Harimanantsoa
Leong Pock Tsy, Jean Michel
Radanielina, Tendro
author_sort Rakotonirina, Tahinarizaka Jenny
collection PubMed
description On Madagascar, the illegal and unsustainable exploitation and illegal international trade of Dalbergia (rosewood) precious woods remain a serious conservation problem. Members of this genus are at high risk of extinction as a consequence of logging, mining, and slash and burn agriculture. Morphological identification of these Malagasy species is difficult in the absence of flowers and fruits, especially in the case of cut trees, sawn wood, and finished product. In this study, we use molecular barcoding to identify the Dalbergia species with the intent to contribute to the control of their illegal trade. Thirty‐six Dalbergia samples representing 12 Malagasy species of which 11 have high commercial value, were collected to test the efficacy of a region of the plastid genome (rbcL) and a nuclear‐transcribed ITS for barcoding. These widely used markers, as well as DNA barcoding gaps, “best match” and “best close match” approaches, and the neighbor‐joining method were employed. All samples were amplified and sequenced using the two markers. Using a single locus, the “best match” and “best close match” approaches revealed that ITS has high discriminatory power within the tested Malagasy species. The combination of rbcL + ITS revealed 100% species discrimination. This study confirms that ITS alone and in combination with chloroplast barcode rbcL allow non‐ambiguous identification for the 12 species studied. The results contribute to the development of DNA barcoding as a useful tool to identify Malagasy Dalbergia and suggest that the approach developed should be expanded to all 56 potentially exploited species in reference to international CITES requirements and the sustainable management of valuable resources.
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spelling pubmed-100153652023-03-16 A DNA barcode reference library for CITES listed Malagasy Dalbergia species Rakotonirina, Tahinarizaka Jenny Viljoen, Erika Rakotonirina, Antso Harimanantsoa Leong Pock Tsy, Jean Michel Radanielina, Tendro Ecol Evol Research Articles On Madagascar, the illegal and unsustainable exploitation and illegal international trade of Dalbergia (rosewood) precious woods remain a serious conservation problem. Members of this genus are at high risk of extinction as a consequence of logging, mining, and slash and burn agriculture. Morphological identification of these Malagasy species is difficult in the absence of flowers and fruits, especially in the case of cut trees, sawn wood, and finished product. In this study, we use molecular barcoding to identify the Dalbergia species with the intent to contribute to the control of their illegal trade. Thirty‐six Dalbergia samples representing 12 Malagasy species of which 11 have high commercial value, were collected to test the efficacy of a region of the plastid genome (rbcL) and a nuclear‐transcribed ITS for barcoding. These widely used markers, as well as DNA barcoding gaps, “best match” and “best close match” approaches, and the neighbor‐joining method were employed. All samples were amplified and sequenced using the two markers. Using a single locus, the “best match” and “best close match” approaches revealed that ITS has high discriminatory power within the tested Malagasy species. The combination of rbcL + ITS revealed 100% species discrimination. This study confirms that ITS alone and in combination with chloroplast barcode rbcL allow non‐ambiguous identification for the 12 species studied. The results contribute to the development of DNA barcoding as a useful tool to identify Malagasy Dalbergia and suggest that the approach developed should be expanded to all 56 potentially exploited species in reference to international CITES requirements and the sustainable management of valuable resources. John Wiley and Sons Inc. 2023-03-15 /pmc/articles/PMC10015365/ /pubmed/36937058 http://dx.doi.org/10.1002/ece3.9887 Text en © 2023 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Rakotonirina, Tahinarizaka Jenny
Viljoen, Erika
Rakotonirina, Antso Harimanantsoa
Leong Pock Tsy, Jean Michel
Radanielina, Tendro
A DNA barcode reference library for CITES listed Malagasy Dalbergia species
title A DNA barcode reference library for CITES listed Malagasy Dalbergia species
title_full A DNA barcode reference library for CITES listed Malagasy Dalbergia species
title_fullStr A DNA barcode reference library for CITES listed Malagasy Dalbergia species
title_full_unstemmed A DNA barcode reference library for CITES listed Malagasy Dalbergia species
title_short A DNA barcode reference library for CITES listed Malagasy Dalbergia species
title_sort dna barcode reference library for cites listed malagasy dalbergia species
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10015365/
https://www.ncbi.nlm.nih.gov/pubmed/36937058
http://dx.doi.org/10.1002/ece3.9887
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