Cargando…

Highly accurate long reads are crucial for realizing the potential of biodiversity genomics

BACKGROUND: Generating the most contiguous, accurate genome assemblies given available sequencing technologies is a long-standing challenge in genome science. With the rise of long-read sequencing, assembly challenges have shifted from merely increasing contiguity to correctly assembling complex, re...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hotaling, Scott, Wilcox, Edward R., Heckenhauer, Jacqueline, Stewart, Russell J., Frandsen, Paul B.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2023
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10018877/ https://www.ncbi.nlm.nih.gov/pubmed/36927511 http://dx.doi.org/10.1186/s12864-023-09193-9

Ejemplares similares

Long Reads Are Revolutionizing 20 Years of Insect Genome Sequencing
por: Hotaling, Scott, et al.
Publicado: (2021)

Analyses of 600+ insect genomes reveal repetitive element dynamics and highlight biodiversity-scale repeat annotation challenges
por: Sproul, John S., et al.
Publicado: (2023)

Long-read HiFi sequencing correctly assembles repetitive heavy fibroin silk genes in new moth and caddisfly genomes
por: Kawahara, Akito Y., et al.
Publicado: (2022)

Conservation of Three-Dimensional Structure of Lepidoptera and Trichoptera L-Fibroins for 290 Million Years
por: Stewart, Russell J., et al.
Publicado: (2022)

Allelic resolution of insect and spider silk genes reveals hidden genetic diversity
por: Frandsen, Paul B., et al.
Publicado: (2023)

Annotated Draft Genomes of Two Caddisfly Species Plectrocnemia conspersa CURTIS and Hydropsyche tenuis NAVAS (Insecta: Trichoptera)
por: Heckenhauer, Jacqueline, et al.
Publicado: (2019)

Aquatic Insects Are Dramatically Underrepresented in Genomic Research
por: Hotaling, Scott, et al.
Publicado: (2020)

Characterization of the primary structure of the major silk gene, h-fibroin, across caddisfly (Trichoptera) suborders
por: Heckenhauer, Jacqueline, et al.
Publicado: (2023)

Toward a genome sequence for every animal: Where are we now?
por: Hotaling, Scott, et al.
Publicado: (2021)

Fast and Accurate Classification of Meta-Genomics Long Reads With deSAMBA
por: Li, Gaoyang, et al.
Publicado: (2021)

Genome size evolution in the diverse insect order Trichoptera
por: Heckenhauer, Jacqueline, et al.
Publicado: (2022)

Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code
por: Rozov, Alexey, et al.
Publicado: (2016)

Realizing the potential of blockchain technologies in genomics
por: Ozercan, Halil Ibrahim, et al.
Publicado: (2018)

Fast and accurate de novo genome assembly from long uncorrected reads
por: Vaser, Robert, et al.
Publicado: (2017)

Fast and accurate mapping of long reads to complete genome assemblies with VerityMap
por: Bzikadze, Andrey V., et al.
Publicado: (2022)

Representation and participation across 20 years of plant genome sequencing
por: Marks, Rose A., et al.
Publicado: (2021)

Accurate assembly of the olive baboon (Papio anubis) genome using long-read and Hi-C data
por: Batra, Sanjit Singh, et al.
Publicado: (2020)

Local read haplotagging enables accurate long-read small variant calling
por: Kolesnikov, Alexey, et al.
Publicado: (2023)

De Novo Genome Assembly and Annotation of an Andean Caddisfly, Atopsyche davidsoni Sykora, 1991, a Model for Genome Research of High-Elevation Adaptations
por: Ríos-Touma, Blanca, et al.
Publicado: (2021)

Restoring biodiversity and slowing climate change are crucial to protect health
por: Butler, Colin D, et al.
Publicado: (2021)

Fast and accurate long-read assembly with wtdbg2
por: Ruan, Jue, et al.
Publicado: (2019)

Accurate spliced alignment of long RNA sequencing reads
por: Sahlin, Kristoffer, et al.
Publicado: (2021)

Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage
por: Chakraborty, Mahul, et al.
Publicado: (2016)

Highly accurate long-read HiFi sequencing data for five complex genomes
por: Hon, Ting, et al.
Publicado: (2020)

Comparative genome analysis using sample-specific string detection in accurate long reads
por: Khorsand, Parsoa, et al.
Publicado: (2021)

Exercise in Multiple Sclerosis: Knowing is Not Enough—The Crucial Role of Intention Formation and Intention Realization
por: Schüler, Julia, et al.
Publicado: (2019)

Specialized meltwater biodiversity persists despite widespread deglaciation
por: Muhlfeld, Clint C., et al.
Publicado: (2020)

Fast and accurate long-read alignment with Burrows–Wheeler transform
por: Li, Heng, et al.
Publicado: (2010)

LoRDEC: accurate and efficient long read error correction
por: Salmela, Leena, et al.
Publicado: (2014)

Haplotype threading: accurate polyploid phasing from long reads
por: Schrinner, Sven D., et al.
Publicado: (2020)

Accurate long-read de novo assembly evaluation with Inspector
por: Chen, Yu, et al.
Publicado: (2021)

Ultra-accurate microbial amplicon sequencing with synthetic long reads
por: Callahan, Benjamin J., et al.
Publicado: (2021)

Sketching and sampling approaches for fast and accurate long read classification
por: Das, Arun, et al.
Publicado: (2022)

Accelerating Minimap2 for Accurate Long Read Alignment on GPUs
por: Sadasivan, Harisankar, et al.
Publicado: (2023)

Decomposing mosaic tandem repeats accurately from long reads
por: Masutani, Bansho, et al.
Publicado: (2023)

Efficient mapping of accurate long reads in minimizer space with mapquik
por: Ekim, Bariş, et al.
Publicado: (2023)

Accurate isoform discovery with IsoQuant using long reads
por: Prjibelski, Andrey D., et al.
Publicado: (2023)

Bioenergy: realizing the potential
por: Silveira, Semida
Publicado: (2005)

Multiplex sequencing of pooled mitochondrial genomes—a crucial step toward biodiversity analysis using mito-metagenomics
por: Tang, Min, et al.
Publicado: (2014)

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
por: Wenger, Aaron M., et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_82n07s726ncq266nq5ddoo04nr