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A chromosome-level reference genome for the Versatile Fairy Shrimp, Branchinecta lindahli
We present the novel reference genome of the Versatile Fairy Shrimp, Branchinecta lindahli. The Versatile Fairy Shrimp is a freshwater anostracan crustacean found across the western United States from Iowa to Oregon and from Alberta to Baja California. It is an ephemeral pool specialist, living in p...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10019023/ https://www.ncbi.nlm.nih.gov/pubmed/36223244 http://dx.doi.org/10.1093/jhered/esac057 |
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author | Kieran Blair, Shannon Rose Schreier, Andrea Escalona, Merly Finger, Amanda J Joslin, Shannon E K Sahasrabudhe, Ruta Marimuthu, Mohan P A Nguyen, Oanh Chumchim, Noravit Morris, Emily Reister Mangelson, Hayley Hull, Joshua |
author_facet | Kieran Blair, Shannon Rose Schreier, Andrea Escalona, Merly Finger, Amanda J Joslin, Shannon E K Sahasrabudhe, Ruta Marimuthu, Mohan P A Nguyen, Oanh Chumchim, Noravit Morris, Emily Reister Mangelson, Hayley Hull, Joshua |
author_sort | Kieran Blair, Shannon Rose |
collection | PubMed |
description | We present the novel reference genome of the Versatile Fairy Shrimp, Branchinecta lindahli. The Versatile Fairy Shrimp is a freshwater anostracan crustacean found across the western United States from Iowa to Oregon and from Alberta to Baja California. It is an ephemeral pool specialist, living in prairie potholes, irrigation ditches, tire treads, vernal pools, and other temporary freshwater wetlands. Anostracan fairy shrimp are facing global declines with 3 species in California on the Endangered Species list. This species was included in the California Conservation Genomics Project to provide an easily accessible reference genome, and to provide whole-genome resources for a generalist species, which may lead to new insights into Anostracan resiliency in the face of climate change. The final gapped genome comprises 15 chromosome-length scaffolds covering 98.63% of the 384.8 Mb sequence length, and an additional 55 unscaffolded contigs. |
format | Online Article Text |
id | pubmed-10019023 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-100190232023-03-17 A chromosome-level reference genome for the Versatile Fairy Shrimp, Branchinecta lindahli Kieran Blair, Shannon Rose Schreier, Andrea Escalona, Merly Finger, Amanda J Joslin, Shannon E K Sahasrabudhe, Ruta Marimuthu, Mohan P A Nguyen, Oanh Chumchim, Noravit Morris, Emily Reister Mangelson, Hayley Hull, Joshua J Hered Genome Resources We present the novel reference genome of the Versatile Fairy Shrimp, Branchinecta lindahli. The Versatile Fairy Shrimp is a freshwater anostracan crustacean found across the western United States from Iowa to Oregon and from Alberta to Baja California. It is an ephemeral pool specialist, living in prairie potholes, irrigation ditches, tire treads, vernal pools, and other temporary freshwater wetlands. Anostracan fairy shrimp are facing global declines with 3 species in California on the Endangered Species list. This species was included in the California Conservation Genomics Project to provide an easily accessible reference genome, and to provide whole-genome resources for a generalist species, which may lead to new insights into Anostracan resiliency in the face of climate change. The final gapped genome comprises 15 chromosome-length scaffolds covering 98.63% of the 384.8 Mb sequence length, and an additional 55 unscaffolded contigs. Oxford University Press 2022-10-12 /pmc/articles/PMC10019023/ /pubmed/36223244 http://dx.doi.org/10.1093/jhered/esac057 Text en © The American Genetic Association. 2022. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Genome Resources Kieran Blair, Shannon Rose Schreier, Andrea Escalona, Merly Finger, Amanda J Joslin, Shannon E K Sahasrabudhe, Ruta Marimuthu, Mohan P A Nguyen, Oanh Chumchim, Noravit Morris, Emily Reister Mangelson, Hayley Hull, Joshua A chromosome-level reference genome for the Versatile Fairy Shrimp, Branchinecta lindahli |
title | A chromosome-level reference genome for the Versatile Fairy Shrimp, Branchinecta lindahli |
title_full | A chromosome-level reference genome for the Versatile Fairy Shrimp, Branchinecta lindahli |
title_fullStr | A chromosome-level reference genome for the Versatile Fairy Shrimp, Branchinecta lindahli |
title_full_unstemmed | A chromosome-level reference genome for the Versatile Fairy Shrimp, Branchinecta lindahli |
title_short | A chromosome-level reference genome for the Versatile Fairy Shrimp, Branchinecta lindahli |
title_sort | chromosome-level reference genome for the versatile fairy shrimp, branchinecta lindahli |
topic | Genome Resources |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10019023/ https://www.ncbi.nlm.nih.gov/pubmed/36223244 http://dx.doi.org/10.1093/jhered/esac057 |
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