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A chromosome-level reference genome for the Versatile Fairy Shrimp, Branchinecta lindahli

We present the novel reference genome of the Versatile Fairy Shrimp, Branchinecta lindahli. The Versatile Fairy Shrimp is a freshwater anostracan crustacean found across the western United States from Iowa to Oregon and from Alberta to Baja California. It is an ephemeral pool specialist, living in p...

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Autores principales: Kieran Blair, Shannon Rose, Schreier, Andrea, Escalona, Merly, Finger, Amanda J, Joslin, Shannon E K, Sahasrabudhe, Ruta, Marimuthu, Mohan P A, Nguyen, Oanh, Chumchim, Noravit, Morris, Emily Reister, Mangelson, Hayley, Hull, Joshua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10019023/
https://www.ncbi.nlm.nih.gov/pubmed/36223244
http://dx.doi.org/10.1093/jhered/esac057
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author Kieran Blair, Shannon Rose
Schreier, Andrea
Escalona, Merly
Finger, Amanda J
Joslin, Shannon E K
Sahasrabudhe, Ruta
Marimuthu, Mohan P A
Nguyen, Oanh
Chumchim, Noravit
Morris, Emily Reister
Mangelson, Hayley
Hull, Joshua
author_facet Kieran Blair, Shannon Rose
Schreier, Andrea
Escalona, Merly
Finger, Amanda J
Joslin, Shannon E K
Sahasrabudhe, Ruta
Marimuthu, Mohan P A
Nguyen, Oanh
Chumchim, Noravit
Morris, Emily Reister
Mangelson, Hayley
Hull, Joshua
author_sort Kieran Blair, Shannon Rose
collection PubMed
description We present the novel reference genome of the Versatile Fairy Shrimp, Branchinecta lindahli. The Versatile Fairy Shrimp is a freshwater anostracan crustacean found across the western United States from Iowa to Oregon and from Alberta to Baja California. It is an ephemeral pool specialist, living in prairie potholes, irrigation ditches, tire treads, vernal pools, and other temporary freshwater wetlands. Anostracan fairy shrimp are facing global declines with 3 species in California on the Endangered Species list. This species was included in the California Conservation Genomics Project to provide an easily accessible reference genome, and to provide whole-genome resources for a generalist species, which may lead to new insights into Anostracan resiliency in the face of climate change. The final gapped genome comprises 15 chromosome-length scaffolds covering 98.63% of the 384.8 Mb sequence length, and an additional 55 unscaffolded contigs.
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spelling pubmed-100190232023-03-17 A chromosome-level reference genome for the Versatile Fairy Shrimp, Branchinecta lindahli Kieran Blair, Shannon Rose Schreier, Andrea Escalona, Merly Finger, Amanda J Joslin, Shannon E K Sahasrabudhe, Ruta Marimuthu, Mohan P A Nguyen, Oanh Chumchim, Noravit Morris, Emily Reister Mangelson, Hayley Hull, Joshua J Hered Genome Resources We present the novel reference genome of the Versatile Fairy Shrimp, Branchinecta lindahli. The Versatile Fairy Shrimp is a freshwater anostracan crustacean found across the western United States from Iowa to Oregon and from Alberta to Baja California. It is an ephemeral pool specialist, living in prairie potholes, irrigation ditches, tire treads, vernal pools, and other temporary freshwater wetlands. Anostracan fairy shrimp are facing global declines with 3 species in California on the Endangered Species list. This species was included in the California Conservation Genomics Project to provide an easily accessible reference genome, and to provide whole-genome resources for a generalist species, which may lead to new insights into Anostracan resiliency in the face of climate change. The final gapped genome comprises 15 chromosome-length scaffolds covering 98.63% of the 384.8 Mb sequence length, and an additional 55 unscaffolded contigs. Oxford University Press 2022-10-12 /pmc/articles/PMC10019023/ /pubmed/36223244 http://dx.doi.org/10.1093/jhered/esac057 Text en © The American Genetic Association. 2022. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Genome Resources
Kieran Blair, Shannon Rose
Schreier, Andrea
Escalona, Merly
Finger, Amanda J
Joslin, Shannon E K
Sahasrabudhe, Ruta
Marimuthu, Mohan P A
Nguyen, Oanh
Chumchim, Noravit
Morris, Emily Reister
Mangelson, Hayley
Hull, Joshua
A chromosome-level reference genome for the Versatile Fairy Shrimp, Branchinecta lindahli
title A chromosome-level reference genome for the Versatile Fairy Shrimp, Branchinecta lindahli
title_full A chromosome-level reference genome for the Versatile Fairy Shrimp, Branchinecta lindahli
title_fullStr A chromosome-level reference genome for the Versatile Fairy Shrimp, Branchinecta lindahli
title_full_unstemmed A chromosome-level reference genome for the Versatile Fairy Shrimp, Branchinecta lindahli
title_short A chromosome-level reference genome for the Versatile Fairy Shrimp, Branchinecta lindahli
title_sort chromosome-level reference genome for the versatile fairy shrimp, branchinecta lindahli
topic Genome Resources
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10019023/
https://www.ncbi.nlm.nih.gov/pubmed/36223244
http://dx.doi.org/10.1093/jhered/esac057
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