Metagenomes from Soils along an Agricultural Transect in Ulster County, New York

Many modern farming practices negatively impact ecosystems on the local and global scales. Here, we assessed the taxonomic structures of 48 soil microbial communities along an agricultural transect using 16S rRNA and internal transcribed spacer (ITS) amplicon sequencing. We further characterized the...

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Detalles Bibliográficos
Autores principales: de Santana, Carolina Oliveira, Spealman, Pieter, Gresham, David, Perron, Gabriel G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2023
Materias:
Omics Data Sets
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10019288/
https://www.ncbi.nlm.nih.gov/pubmed/36779724
http://dx.doi.org/10.1128/mra.01015-22
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author de Santana, Carolina Oliveira
Spealman, Pieter
Gresham, David
Perron, Gabriel G.
author_facet de Santana, Carolina Oliveira
Spealman, Pieter
Gresham, David
Perron, Gabriel G.
author_sort de Santana, Carolina Oliveira
collection PubMed
description Many modern farming practices negatively impact ecosystems on the local and global scales. Here, we assessed the taxonomic structures of 48 soil microbial communities along an agricultural transect using 16S rRNA and internal transcribed spacer (ITS) amplicon sequencing. We further characterized the functional structures of a subsample of 12 microbiomes using whole-genome sequencing.
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spelling pubmed-100192882023-03-17 Metagenomes from Soils along an Agricultural Transect in Ulster County, New York de Santana, Carolina Oliveira Spealman, Pieter Gresham, David Perron, Gabriel G. Microbiol Resour Announc Omics Data Sets Many modern farming practices negatively impact ecosystems on the local and global scales. Here, we assessed the taxonomic structures of 48 soil microbial communities along an agricultural transect using 16S rRNA and internal transcribed spacer (ITS) amplicon sequencing. We further characterized the functional structures of a subsample of 12 microbiomes using whole-genome sequencing. American Society for Microbiology 2023-02-13 /pmc/articles/PMC10019288/ /pubmed/36779724 http://dx.doi.org/10.1128/mra.01015-22 Text en Copyright © 2023 de Santana et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Omics Data Sets
de Santana, Carolina Oliveira
Spealman, Pieter
Gresham, David
Perron, Gabriel G.
Metagenomes from Soils along an Agricultural Transect in Ulster County, New York
title Metagenomes from Soils along an Agricultural Transect in Ulster County, New York
title_full Metagenomes from Soils along an Agricultural Transect in Ulster County, New York
title_fullStr Metagenomes from Soils along an Agricultural Transect in Ulster County, New York
title_full_unstemmed Metagenomes from Soils along an Agricultural Transect in Ulster County, New York
title_short Metagenomes from Soils along an Agricultural Transect in Ulster County, New York
title_sort metagenomes from soils along an agricultural transect in ulster county, new york
topic Omics Data Sets
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10019288/
https://www.ncbi.nlm.nih.gov/pubmed/36779724
http://dx.doi.org/10.1128/mra.01015-22
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