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Design considerations for a hierarchical semantic compositional framework for medical natural language understanding

Medical natural language processing (NLP) systems are a key enabling technology for transforming Big Data from clinical report repositories to information used to support disease models and validate intervention methods. However, current medical NLP systems fall considerably short when faced with th...

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Detalles Bibliográficos
Autores principales: Taira, Ricky K., Garlid, Anders O., Speier, William
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10019629/
https://www.ncbi.nlm.nih.gov/pubmed/36928721
http://dx.doi.org/10.1371/journal.pone.0282882
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author Taira, Ricky K.
Garlid, Anders O.
Speier, William
author_facet Taira, Ricky K.
Garlid, Anders O.
Speier, William
author_sort Taira, Ricky K.
collection PubMed
description Medical natural language processing (NLP) systems are a key enabling technology for transforming Big Data from clinical report repositories to information used to support disease models and validate intervention methods. However, current medical NLP systems fall considerably short when faced with the task of logically interpreting clinical text. In this paper, we describe a framework inspired by mechanisms of human cognition in an attempt to jump the NLP performance curve. The design centers on a hierarchical semantic compositional model (HSCM), which provides an internal substrate for guiding the interpretation process. The paper describes insights from four key cognitive aspects: semantic memory, semantic composition, semantic activation, and hierarchical predictive coding. We discuss the design of a generative semantic model and an associated semantic parser used to transform a free-text sentence into a logical representation of its meaning. The paper discusses supportive and antagonistic arguments for the key features of the architecture as a long-term foundational framework.
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spelling pubmed-100196292023-03-17 Design considerations for a hierarchical semantic compositional framework for medical natural language understanding Taira, Ricky K. Garlid, Anders O. Speier, William PLoS One Research Article Medical natural language processing (NLP) systems are a key enabling technology for transforming Big Data from clinical report repositories to information used to support disease models and validate intervention methods. However, current medical NLP systems fall considerably short when faced with the task of logically interpreting clinical text. In this paper, we describe a framework inspired by mechanisms of human cognition in an attempt to jump the NLP performance curve. The design centers on a hierarchical semantic compositional model (HSCM), which provides an internal substrate for guiding the interpretation process. The paper describes insights from four key cognitive aspects: semantic memory, semantic composition, semantic activation, and hierarchical predictive coding. We discuss the design of a generative semantic model and an associated semantic parser used to transform a free-text sentence into a logical representation of its meaning. The paper discusses supportive and antagonistic arguments for the key features of the architecture as a long-term foundational framework. Public Library of Science 2023-03-16 /pmc/articles/PMC10019629/ /pubmed/36928721 http://dx.doi.org/10.1371/journal.pone.0282882 Text en © 2023 Taira et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Taira, Ricky K.
Garlid, Anders O.
Speier, William
Design considerations for a hierarchical semantic compositional framework for medical natural language understanding
title Design considerations for a hierarchical semantic compositional framework for medical natural language understanding
title_full Design considerations for a hierarchical semantic compositional framework for medical natural language understanding
title_fullStr Design considerations for a hierarchical semantic compositional framework for medical natural language understanding
title_full_unstemmed Design considerations for a hierarchical semantic compositional framework for medical natural language understanding
title_short Design considerations for a hierarchical semantic compositional framework for medical natural language understanding
title_sort design considerations for a hierarchical semantic compositional framework for medical natural language understanding
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10019629/
https://www.ncbi.nlm.nih.gov/pubmed/36928721
http://dx.doi.org/10.1371/journal.pone.0282882
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