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Pyroptosis-based risk score predicts prognosis and drug sensitivity in lung adenocarcinoma
Pyroptosis is a recently identified form of programmed cell death; however, its role in lung adenocarcinoma (LUAD) remains unclear. Therefore, we set out to explore the prognostic potential of pyroptosis-related genes in LUAD. The pyroptosis-related risk score (PRRS) was developed by least absolute...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
De Gruyter
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10024350/ https://www.ncbi.nlm.nih.gov/pubmed/36941988 http://dx.doi.org/10.1515/med-2023-0663 |
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author | Jiang, Zhengsong Wang, Xiang Huang, Jinghan Li, Guoyin Li, Shangfu |
author_facet | Jiang, Zhengsong Wang, Xiang Huang, Jinghan Li, Guoyin Li, Shangfu |
author_sort | Jiang, Zhengsong |
collection | PubMed |
description | Pyroptosis is a recently identified form of programmed cell death; however, its role in lung adenocarcinoma (LUAD) remains unclear. Therefore, we set out to explore the prognostic potential of pyroptosis-related genes in LUAD. The pyroptosis-related risk score (PRRS) was developed by least absolute shrinkage and selection operator Cox regression and multivariate Cox regression. We found that PRRS was an independent prognostic factor for LUAD. LUAD patients in the high-PRRS group showed a significantly shorter overall survival (OS) and enriched in cell proliferation-related pathways. Then pathway enrichment analyses, mutation profile, tumor microenvironment, and drug sensitivity analysis were further studied in PRRS stratified LUAD patients. Tumor purity (TP) analyses revealed that L-PRRS LUAD patients had a lower TP, and patients in L-TP + L-PRRS subgroup had the most prolonged OS. Mutation analyses suggested that the L-PRRS LUAD patients had a lower tumor mutation burden (TMB), and patients in H-TMB + L-PRRS subgroup had the most prolonged OS. Drug sensitivity analyses showed that PRRS was significantly negatively correlated with the sensitivity of cisplatin, besarotene, etc., while it was significantly positively correlated with the sensitivity of kin001-135. Eventually, a nomogram was constructed based on PRRS and clinical characters of LUAD. Overall, the pyroptosis-related signature is helpful for prognostic prediction and in guiding treatment for LUAD patients. |
format | Online Article Text |
id | pubmed-10024350 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | De Gruyter |
record_format | MEDLINE/PubMed |
spelling | pubmed-100243502023-03-19 Pyroptosis-based risk score predicts prognosis and drug sensitivity in lung adenocarcinoma Jiang, Zhengsong Wang, Xiang Huang, Jinghan Li, Guoyin Li, Shangfu Open Med (Wars) Research Article Pyroptosis is a recently identified form of programmed cell death; however, its role in lung adenocarcinoma (LUAD) remains unclear. Therefore, we set out to explore the prognostic potential of pyroptosis-related genes in LUAD. The pyroptosis-related risk score (PRRS) was developed by least absolute shrinkage and selection operator Cox regression and multivariate Cox regression. We found that PRRS was an independent prognostic factor for LUAD. LUAD patients in the high-PRRS group showed a significantly shorter overall survival (OS) and enriched in cell proliferation-related pathways. Then pathway enrichment analyses, mutation profile, tumor microenvironment, and drug sensitivity analysis were further studied in PRRS stratified LUAD patients. Tumor purity (TP) analyses revealed that L-PRRS LUAD patients had a lower TP, and patients in L-TP + L-PRRS subgroup had the most prolonged OS. Mutation analyses suggested that the L-PRRS LUAD patients had a lower tumor mutation burden (TMB), and patients in H-TMB + L-PRRS subgroup had the most prolonged OS. Drug sensitivity analyses showed that PRRS was significantly negatively correlated with the sensitivity of cisplatin, besarotene, etc., while it was significantly positively correlated with the sensitivity of kin001-135. Eventually, a nomogram was constructed based on PRRS and clinical characters of LUAD. Overall, the pyroptosis-related signature is helpful for prognostic prediction and in guiding treatment for LUAD patients. De Gruyter 2023-03-13 /pmc/articles/PMC10024350/ /pubmed/36941988 http://dx.doi.org/10.1515/med-2023-0663 Text en © 2023 the author(s), published by De Gruyter https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License. |
spellingShingle | Research Article Jiang, Zhengsong Wang, Xiang Huang, Jinghan Li, Guoyin Li, Shangfu Pyroptosis-based risk score predicts prognosis and drug sensitivity in lung adenocarcinoma |
title | Pyroptosis-based risk score predicts prognosis and drug sensitivity in lung adenocarcinoma |
title_full | Pyroptosis-based risk score predicts prognosis and drug sensitivity in lung adenocarcinoma |
title_fullStr | Pyroptosis-based risk score predicts prognosis and drug sensitivity in lung adenocarcinoma |
title_full_unstemmed | Pyroptosis-based risk score predicts prognosis and drug sensitivity in lung adenocarcinoma |
title_short | Pyroptosis-based risk score predicts prognosis and drug sensitivity in lung adenocarcinoma |
title_sort | pyroptosis-based risk score predicts prognosis and drug sensitivity in lung adenocarcinoma |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10024350/ https://www.ncbi.nlm.nih.gov/pubmed/36941988 http://dx.doi.org/10.1515/med-2023-0663 |
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