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Molecular size dependence on achievable resolution from XFEL single-particle 3D reconstruction
Single-particle analysis using x-ray free-electron lasers (XFELs) is a novel method for obtaining structural information of samples in a state close to nature. In particular, it is suitable for observing the inner structure of large biomolecules by taking advantage of the high transmittance of x-ray...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Crystallographic Association
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10024609/ https://www.ncbi.nlm.nih.gov/pubmed/36942031 http://dx.doi.org/10.1063/4.0000175 |
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author | Nakano, Miki Miyashita, Osamu Tama, Florence |
author_facet | Nakano, Miki Miyashita, Osamu Tama, Florence |
author_sort | Nakano, Miki |
collection | PubMed |
description | Single-particle analysis using x-ray free-electron lasers (XFELs) is a novel method for obtaining structural information of samples in a state close to nature. In particular, it is suitable for observing the inner structure of large biomolecules by taking advantage of the high transmittance of x-rays. However, systematic studies on the resolution achievable for large molecules are lacking. In this study, the molecular size dependence of the resolution of a three-dimensional (3D) structure resulting from XFEL single-particle reconstruction is evaluated using synthetic data. Evidently, 3D structures of larger molecules can be restored with higher detail (defined relative to the molecular sizes) than smaller ones; however, reconstruction with high absolute resolution (defined in nm(−1)) is challenging. Our results provide useful information for the experimental design of 3D structure reconstruction using coherent x-ray diffraction patterns of single-particles. |
format | Online Article Text |
id | pubmed-10024609 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Crystallographic Association |
record_format | MEDLINE/PubMed |
spelling | pubmed-100246092023-03-19 Molecular size dependence on achievable resolution from XFEL single-particle 3D reconstruction Nakano, Miki Miyashita, Osamu Tama, Florence Struct Dyn ARTICLES Single-particle analysis using x-ray free-electron lasers (XFELs) is a novel method for obtaining structural information of samples in a state close to nature. In particular, it is suitable for observing the inner structure of large biomolecules by taking advantage of the high transmittance of x-rays. However, systematic studies on the resolution achievable for large molecules are lacking. In this study, the molecular size dependence of the resolution of a three-dimensional (3D) structure resulting from XFEL single-particle reconstruction is evaluated using synthetic data. Evidently, 3D structures of larger molecules can be restored with higher detail (defined relative to the molecular sizes) than smaller ones; however, reconstruction with high absolute resolution (defined in nm(−1)) is challenging. Our results provide useful information for the experimental design of 3D structure reconstruction using coherent x-ray diffraction patterns of single-particles. American Crystallographic Association 2023-03-17 /pmc/articles/PMC10024609/ /pubmed/36942031 http://dx.doi.org/10.1063/4.0000175 Text en © 2023 Author(s). https://creativecommons.org/licenses/by/4.0/All article content, except where otherwise noted, is licensed under a Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ). |
spellingShingle | ARTICLES Nakano, Miki Miyashita, Osamu Tama, Florence Molecular size dependence on achievable resolution from XFEL single-particle 3D reconstruction |
title | Molecular size dependence on achievable resolution from XFEL single-particle 3D reconstruction |
title_full | Molecular size dependence on achievable resolution from XFEL single-particle 3D reconstruction |
title_fullStr | Molecular size dependence on achievable resolution from XFEL single-particle 3D reconstruction |
title_full_unstemmed | Molecular size dependence on achievable resolution from XFEL single-particle 3D reconstruction |
title_short | Molecular size dependence on achievable resolution from XFEL single-particle 3D reconstruction |
title_sort | molecular size dependence on achievable resolution from xfel single-particle 3d reconstruction |
topic | ARTICLES |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10024609/ https://www.ncbi.nlm.nih.gov/pubmed/36942031 http://dx.doi.org/10.1063/4.0000175 |
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