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Molecular size dependence on achievable resolution from XFEL single-particle 3D reconstruction

Single-particle analysis using x-ray free-electron lasers (XFELs) is a novel method for obtaining structural information of samples in a state close to nature. In particular, it is suitable for observing the inner structure of large biomolecules by taking advantage of the high transmittance of x-ray...

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Autores principales: Nakano, Miki, Miyashita, Osamu, Tama, Florence
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Crystallographic Association 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10024609/
https://www.ncbi.nlm.nih.gov/pubmed/36942031
http://dx.doi.org/10.1063/4.0000175
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author Nakano, Miki
Miyashita, Osamu
Tama, Florence
author_facet Nakano, Miki
Miyashita, Osamu
Tama, Florence
author_sort Nakano, Miki
collection PubMed
description Single-particle analysis using x-ray free-electron lasers (XFELs) is a novel method for obtaining structural information of samples in a state close to nature. In particular, it is suitable for observing the inner structure of large biomolecules by taking advantage of the high transmittance of x-rays. However, systematic studies on the resolution achievable for large molecules are lacking. In this study, the molecular size dependence of the resolution of a three-dimensional (3D) structure resulting from XFEL single-particle reconstruction is evaluated using synthetic data. Evidently, 3D structures of larger molecules can be restored with higher detail (defined relative to the molecular sizes) than smaller ones; however, reconstruction with high absolute resolution (defined in nm(−1)) is challenging. Our results provide useful information for the experimental design of 3D structure reconstruction using coherent x-ray diffraction patterns of single-particles.
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spelling pubmed-100246092023-03-19 Molecular size dependence on achievable resolution from XFEL single-particle 3D reconstruction Nakano, Miki Miyashita, Osamu Tama, Florence Struct Dyn ARTICLES Single-particle analysis using x-ray free-electron lasers (XFELs) is a novel method for obtaining structural information of samples in a state close to nature. In particular, it is suitable for observing the inner structure of large biomolecules by taking advantage of the high transmittance of x-rays. However, systematic studies on the resolution achievable for large molecules are lacking. In this study, the molecular size dependence of the resolution of a three-dimensional (3D) structure resulting from XFEL single-particle reconstruction is evaluated using synthetic data. Evidently, 3D structures of larger molecules can be restored with higher detail (defined relative to the molecular sizes) than smaller ones; however, reconstruction with high absolute resolution (defined in nm(−1)) is challenging. Our results provide useful information for the experimental design of 3D structure reconstruction using coherent x-ray diffraction patterns of single-particles. American Crystallographic Association 2023-03-17 /pmc/articles/PMC10024609/ /pubmed/36942031 http://dx.doi.org/10.1063/4.0000175 Text en © 2023 Author(s). https://creativecommons.org/licenses/by/4.0/All article content, except where otherwise noted, is licensed under a Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ).
spellingShingle ARTICLES
Nakano, Miki
Miyashita, Osamu
Tama, Florence
Molecular size dependence on achievable resolution from XFEL single-particle 3D reconstruction
title Molecular size dependence on achievable resolution from XFEL single-particle 3D reconstruction
title_full Molecular size dependence on achievable resolution from XFEL single-particle 3D reconstruction
title_fullStr Molecular size dependence on achievable resolution from XFEL single-particle 3D reconstruction
title_full_unstemmed Molecular size dependence on achievable resolution from XFEL single-particle 3D reconstruction
title_short Molecular size dependence on achievable resolution from XFEL single-particle 3D reconstruction
title_sort molecular size dependence on achievable resolution from xfel single-particle 3d reconstruction
topic ARTICLES
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10024609/
https://www.ncbi.nlm.nih.gov/pubmed/36942031
http://dx.doi.org/10.1063/4.0000175
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