Cargando…
A dynamic clamping approach using in silico IK1 current for discrimination of chamber-specific hiPSC-derived cardiomyocytes
Human induced pluripotent stem cell (hiPSC)-derived cardiomyocytes (CM) constitute a mixed population of ventricular-, atrial-, nodal-like cells, limiting the reliability for studying chamber-specific disease mechanisms. Previous studies characterised CM phenotype based on action potential (AP) morp...
Autores principales: | , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10024709/ https://www.ncbi.nlm.nih.gov/pubmed/36934210 http://dx.doi.org/10.1038/s42003-023-04674-9 |
_version_ | 1784909167020998656 |
---|---|
author | Altomare, Claudia Bartolucci, Chiara Sala, Luca Balbi, Carolina Burrello, Jacopo Pietrogiovanna, Nicole Burrello, Alessio Bolis, Sara Panella, Stefano Arici, Martina Krause, Rolf Rocchetti, Marcella Severi, Stefano Barile, Lucio |
author_facet | Altomare, Claudia Bartolucci, Chiara Sala, Luca Balbi, Carolina Burrello, Jacopo Pietrogiovanna, Nicole Burrello, Alessio Bolis, Sara Panella, Stefano Arici, Martina Krause, Rolf Rocchetti, Marcella Severi, Stefano Barile, Lucio |
author_sort | Altomare, Claudia |
collection | PubMed |
description | Human induced pluripotent stem cell (hiPSC)-derived cardiomyocytes (CM) constitute a mixed population of ventricular-, atrial-, nodal-like cells, limiting the reliability for studying chamber-specific disease mechanisms. Previous studies characterised CM phenotype based on action potential (AP) morphology, but the classification criteria were still undefined. Our aim was to use in silico models to develop an automated approach for discriminating the electrophysiological differences between hiPSC-CM. We propose the dynamic clamp (DC) technique with the injection of a specific I(K1) current as a tool for deriving nine electrical biomarkers and blindly classifying differentiated CM. An unsupervised learning algorithm was applied to discriminate CM phenotypes and principal component analysis was used to visualise cell clustering. Pharmacological validation was performed by specific ion channel blocker and receptor agonist. The proposed approach improves the translational relevance of the hiPSC-CM model for studying mechanisms underlying inherited or acquired atrial arrhythmias in human CM, and for screening anti-arrhythmic agents. |
format | Online Article Text |
id | pubmed-10024709 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-100247092023-03-20 A dynamic clamping approach using in silico IK1 current for discrimination of chamber-specific hiPSC-derived cardiomyocytes Altomare, Claudia Bartolucci, Chiara Sala, Luca Balbi, Carolina Burrello, Jacopo Pietrogiovanna, Nicole Burrello, Alessio Bolis, Sara Panella, Stefano Arici, Martina Krause, Rolf Rocchetti, Marcella Severi, Stefano Barile, Lucio Commun Biol Article Human induced pluripotent stem cell (hiPSC)-derived cardiomyocytes (CM) constitute a mixed population of ventricular-, atrial-, nodal-like cells, limiting the reliability for studying chamber-specific disease mechanisms. Previous studies characterised CM phenotype based on action potential (AP) morphology, but the classification criteria were still undefined. Our aim was to use in silico models to develop an automated approach for discriminating the electrophysiological differences between hiPSC-CM. We propose the dynamic clamp (DC) technique with the injection of a specific I(K1) current as a tool for deriving nine electrical biomarkers and blindly classifying differentiated CM. An unsupervised learning algorithm was applied to discriminate CM phenotypes and principal component analysis was used to visualise cell clustering. Pharmacological validation was performed by specific ion channel blocker and receptor agonist. The proposed approach improves the translational relevance of the hiPSC-CM model for studying mechanisms underlying inherited or acquired atrial arrhythmias in human CM, and for screening anti-arrhythmic agents. Nature Publishing Group UK 2023-03-18 /pmc/articles/PMC10024709/ /pubmed/36934210 http://dx.doi.org/10.1038/s42003-023-04674-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Altomare, Claudia Bartolucci, Chiara Sala, Luca Balbi, Carolina Burrello, Jacopo Pietrogiovanna, Nicole Burrello, Alessio Bolis, Sara Panella, Stefano Arici, Martina Krause, Rolf Rocchetti, Marcella Severi, Stefano Barile, Lucio A dynamic clamping approach using in silico IK1 current for discrimination of chamber-specific hiPSC-derived cardiomyocytes |
title | A dynamic clamping approach using in silico IK1 current for discrimination of chamber-specific hiPSC-derived cardiomyocytes |
title_full | A dynamic clamping approach using in silico IK1 current for discrimination of chamber-specific hiPSC-derived cardiomyocytes |
title_fullStr | A dynamic clamping approach using in silico IK1 current for discrimination of chamber-specific hiPSC-derived cardiomyocytes |
title_full_unstemmed | A dynamic clamping approach using in silico IK1 current for discrimination of chamber-specific hiPSC-derived cardiomyocytes |
title_short | A dynamic clamping approach using in silico IK1 current for discrimination of chamber-specific hiPSC-derived cardiomyocytes |
title_sort | dynamic clamping approach using in silico ik1 current for discrimination of chamber-specific hipsc-derived cardiomyocytes |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10024709/ https://www.ncbi.nlm.nih.gov/pubmed/36934210 http://dx.doi.org/10.1038/s42003-023-04674-9 |
work_keys_str_mv | AT altomareclaudia adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT bartoluccichiara adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT salaluca adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT balbicarolina adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT burrellojacopo adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT pietrogiovannanicole adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT burrelloalessio adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT bolissara adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT panellastefano adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT aricimartina adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT krauserolf adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT rocchettimarcella adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT severistefano adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT barilelucio adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT altomareclaudia dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT bartoluccichiara dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT salaluca dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT balbicarolina dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT burrellojacopo dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT pietrogiovannanicole dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT burrelloalessio dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT bolissara dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT panellastefano dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT aricimartina dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT krauserolf dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT rocchettimarcella dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT severistefano dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes AT barilelucio dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes |