Cargando…

A dynamic clamping approach using in silico IK1 current for discrimination of chamber-specific hiPSC-derived cardiomyocytes

Human induced pluripotent stem cell (hiPSC)-derived cardiomyocytes (CM) constitute a mixed population of ventricular-, atrial-, nodal-like cells, limiting the reliability for studying chamber-specific disease mechanisms. Previous studies characterised CM phenotype based on action potential (AP) morp...

Descripción completa

Detalles Bibliográficos
Autores principales: Altomare, Claudia, Bartolucci, Chiara, Sala, Luca, Balbi, Carolina, Burrello, Jacopo, Pietrogiovanna, Nicole, Burrello, Alessio, Bolis, Sara, Panella, Stefano, Arici, Martina, Krause, Rolf, Rocchetti, Marcella, Severi, Stefano, Barile, Lucio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10024709/
https://www.ncbi.nlm.nih.gov/pubmed/36934210
http://dx.doi.org/10.1038/s42003-023-04674-9
_version_ 1784909167020998656
author Altomare, Claudia
Bartolucci, Chiara
Sala, Luca
Balbi, Carolina
Burrello, Jacopo
Pietrogiovanna, Nicole
Burrello, Alessio
Bolis, Sara
Panella, Stefano
Arici, Martina
Krause, Rolf
Rocchetti, Marcella
Severi, Stefano
Barile, Lucio
author_facet Altomare, Claudia
Bartolucci, Chiara
Sala, Luca
Balbi, Carolina
Burrello, Jacopo
Pietrogiovanna, Nicole
Burrello, Alessio
Bolis, Sara
Panella, Stefano
Arici, Martina
Krause, Rolf
Rocchetti, Marcella
Severi, Stefano
Barile, Lucio
author_sort Altomare, Claudia
collection PubMed
description Human induced pluripotent stem cell (hiPSC)-derived cardiomyocytes (CM) constitute a mixed population of ventricular-, atrial-, nodal-like cells, limiting the reliability for studying chamber-specific disease mechanisms. Previous studies characterised CM phenotype based on action potential (AP) morphology, but the classification criteria were still undefined. Our aim was to use in silico models to develop an automated approach for discriminating the electrophysiological differences between hiPSC-CM. We propose the dynamic clamp (DC) technique with the injection of a specific I(K1) current as a tool for deriving nine electrical biomarkers and blindly classifying differentiated CM. An unsupervised learning algorithm was applied to discriminate CM phenotypes and principal component analysis was used to visualise cell clustering. Pharmacological validation was performed by specific ion channel blocker and receptor agonist. The proposed approach improves the translational relevance of the hiPSC-CM model for studying mechanisms underlying inherited or acquired atrial arrhythmias in human CM, and for screening anti-arrhythmic agents.
format Online
Article
Text
id pubmed-10024709
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-100247092023-03-20 A dynamic clamping approach using in silico IK1 current for discrimination of chamber-specific hiPSC-derived cardiomyocytes Altomare, Claudia Bartolucci, Chiara Sala, Luca Balbi, Carolina Burrello, Jacopo Pietrogiovanna, Nicole Burrello, Alessio Bolis, Sara Panella, Stefano Arici, Martina Krause, Rolf Rocchetti, Marcella Severi, Stefano Barile, Lucio Commun Biol Article Human induced pluripotent stem cell (hiPSC)-derived cardiomyocytes (CM) constitute a mixed population of ventricular-, atrial-, nodal-like cells, limiting the reliability for studying chamber-specific disease mechanisms. Previous studies characterised CM phenotype based on action potential (AP) morphology, but the classification criteria were still undefined. Our aim was to use in silico models to develop an automated approach for discriminating the electrophysiological differences between hiPSC-CM. We propose the dynamic clamp (DC) technique with the injection of a specific I(K1) current as a tool for deriving nine electrical biomarkers and blindly classifying differentiated CM. An unsupervised learning algorithm was applied to discriminate CM phenotypes and principal component analysis was used to visualise cell clustering. Pharmacological validation was performed by specific ion channel blocker and receptor agonist. The proposed approach improves the translational relevance of the hiPSC-CM model for studying mechanisms underlying inherited or acquired atrial arrhythmias in human CM, and for screening anti-arrhythmic agents. Nature Publishing Group UK 2023-03-18 /pmc/articles/PMC10024709/ /pubmed/36934210 http://dx.doi.org/10.1038/s42003-023-04674-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Altomare, Claudia
Bartolucci, Chiara
Sala, Luca
Balbi, Carolina
Burrello, Jacopo
Pietrogiovanna, Nicole
Burrello, Alessio
Bolis, Sara
Panella, Stefano
Arici, Martina
Krause, Rolf
Rocchetti, Marcella
Severi, Stefano
Barile, Lucio
A dynamic clamping approach using in silico IK1 current for discrimination of chamber-specific hiPSC-derived cardiomyocytes
title A dynamic clamping approach using in silico IK1 current for discrimination of chamber-specific hiPSC-derived cardiomyocytes
title_full A dynamic clamping approach using in silico IK1 current for discrimination of chamber-specific hiPSC-derived cardiomyocytes
title_fullStr A dynamic clamping approach using in silico IK1 current for discrimination of chamber-specific hiPSC-derived cardiomyocytes
title_full_unstemmed A dynamic clamping approach using in silico IK1 current for discrimination of chamber-specific hiPSC-derived cardiomyocytes
title_short A dynamic clamping approach using in silico IK1 current for discrimination of chamber-specific hiPSC-derived cardiomyocytes
title_sort dynamic clamping approach using in silico ik1 current for discrimination of chamber-specific hipsc-derived cardiomyocytes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10024709/
https://www.ncbi.nlm.nih.gov/pubmed/36934210
http://dx.doi.org/10.1038/s42003-023-04674-9
work_keys_str_mv AT altomareclaudia adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT bartoluccichiara adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT salaluca adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT balbicarolina adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT burrellojacopo adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT pietrogiovannanicole adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT burrelloalessio adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT bolissara adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT panellastefano adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT aricimartina adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT krauserolf adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT rocchettimarcella adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT severistefano adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT barilelucio adynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT altomareclaudia dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT bartoluccichiara dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT salaluca dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT balbicarolina dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT burrellojacopo dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT pietrogiovannanicole dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT burrelloalessio dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT bolissara dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT panellastefano dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT aricimartina dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT krauserolf dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT rocchettimarcella dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT severistefano dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes
AT barilelucio dynamicclampingapproachusinginsilicoik1currentfordiscriminationofchamberspecifichipscderivedcardiomyocytes