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Comparative study of convolutional neural network architectures for gastrointestinal lesions classification

The gastrointestinal (GI) tract can be affected by different diseases or lesions such as esophagitis, ulcers, hemorrhoids, and polyps, among others. Some of them can be precursors of cancer such as polyps. Endoscopy is the standard procedure for the detection of these lesions. The main drawback of t...

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Autores principales: Cuevas-Rodriguez, Erik O., Galvan-Tejada, Carlos E., Maeda-Gutiérrez, Valeria, Moreno-Chávez, Gamaliel, Galván-Tejada, Jorge I., Gamboa-Rosales, Hamurabi, Luna-García, Huizilopoztli, Moreno-Baez, Arturo, Celaya-Padilla, José María
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10024900/
https://www.ncbi.nlm.nih.gov/pubmed/36945355
http://dx.doi.org/10.7717/peerj.14806
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author Cuevas-Rodriguez, Erik O.
Galvan-Tejada, Carlos E.
Maeda-Gutiérrez, Valeria
Moreno-Chávez, Gamaliel
Galván-Tejada, Jorge I.
Gamboa-Rosales, Hamurabi
Luna-García, Huizilopoztli
Moreno-Baez, Arturo
Celaya-Padilla, José María
author_facet Cuevas-Rodriguez, Erik O.
Galvan-Tejada, Carlos E.
Maeda-Gutiérrez, Valeria
Moreno-Chávez, Gamaliel
Galván-Tejada, Jorge I.
Gamboa-Rosales, Hamurabi
Luna-García, Huizilopoztli
Moreno-Baez, Arturo
Celaya-Padilla, José María
author_sort Cuevas-Rodriguez, Erik O.
collection PubMed
description The gastrointestinal (GI) tract can be affected by different diseases or lesions such as esophagitis, ulcers, hemorrhoids, and polyps, among others. Some of them can be precursors of cancer such as polyps. Endoscopy is the standard procedure for the detection of these lesions. The main drawback of this procedure is that the diagnosis depends on the expertise of the doctor. This means that some important findings may be missed. In recent years, this problem has been addressed by deep learning (DL) techniques. Endoscopic studies use digital images. The most widely used DL technique for image processing is the convolutional neural network (CNN) due to its high accuracy for modeling complex phenomena. There are different CNNs that are characterized by their architecture. In this article, four architectures are compared: AlexNet, DenseNet-201, Inception-v3, and ResNet-101. To determine which architecture best classifies GI tract lesions, a set of metrics; accuracy, precision, sensitivity, specificity, F1-score, and area under the curve (AUC) were used. These architectures were trained and tested on the HyperKvasir dataset. From this dataset, a total of 6,792 images corresponding to 10 findings were used. A transfer learning approach and a data augmentation technique were applied. The best performing architecture was DenseNet-201, whose results were: 97.11% of accuracy, 96.3% sensitivity, 99.67% specificity, and 95% AUC.
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spelling pubmed-100249002023-03-20 Comparative study of convolutional neural network architectures for gastrointestinal lesions classification Cuevas-Rodriguez, Erik O. Galvan-Tejada, Carlos E. Maeda-Gutiérrez, Valeria Moreno-Chávez, Gamaliel Galván-Tejada, Jorge I. Gamboa-Rosales, Hamurabi Luna-García, Huizilopoztli Moreno-Baez, Arturo Celaya-Padilla, José María PeerJ Gastroenterology and Hepatology The gastrointestinal (GI) tract can be affected by different diseases or lesions such as esophagitis, ulcers, hemorrhoids, and polyps, among others. Some of them can be precursors of cancer such as polyps. Endoscopy is the standard procedure for the detection of these lesions. The main drawback of this procedure is that the diagnosis depends on the expertise of the doctor. This means that some important findings may be missed. In recent years, this problem has been addressed by deep learning (DL) techniques. Endoscopic studies use digital images. The most widely used DL technique for image processing is the convolutional neural network (CNN) due to its high accuracy for modeling complex phenomena. There are different CNNs that are characterized by their architecture. In this article, four architectures are compared: AlexNet, DenseNet-201, Inception-v3, and ResNet-101. To determine which architecture best classifies GI tract lesions, a set of metrics; accuracy, precision, sensitivity, specificity, F1-score, and area under the curve (AUC) were used. These architectures were trained and tested on the HyperKvasir dataset. From this dataset, a total of 6,792 images corresponding to 10 findings were used. A transfer learning approach and a data augmentation technique were applied. The best performing architecture was DenseNet-201, whose results were: 97.11% of accuracy, 96.3% sensitivity, 99.67% specificity, and 95% AUC. PeerJ Inc. 2023-03-16 /pmc/articles/PMC10024900/ /pubmed/36945355 http://dx.doi.org/10.7717/peerj.14806 Text en © 2023 Cuevas-Rodriguez et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Gastroenterology and Hepatology
Cuevas-Rodriguez, Erik O.
Galvan-Tejada, Carlos E.
Maeda-Gutiérrez, Valeria
Moreno-Chávez, Gamaliel
Galván-Tejada, Jorge I.
Gamboa-Rosales, Hamurabi
Luna-García, Huizilopoztli
Moreno-Baez, Arturo
Celaya-Padilla, José María
Comparative study of convolutional neural network architectures for gastrointestinal lesions classification
title Comparative study of convolutional neural network architectures for gastrointestinal lesions classification
title_full Comparative study of convolutional neural network architectures for gastrointestinal lesions classification
title_fullStr Comparative study of convolutional neural network architectures for gastrointestinal lesions classification
title_full_unstemmed Comparative study of convolutional neural network architectures for gastrointestinal lesions classification
title_short Comparative study of convolutional neural network architectures for gastrointestinal lesions classification
title_sort comparative study of convolutional neural network architectures for gastrointestinal lesions classification
topic Gastroenterology and Hepatology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10024900/
https://www.ncbi.nlm.nih.gov/pubmed/36945355
http://dx.doi.org/10.7717/peerj.14806
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