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Guidelines on lung adenocarcinoma prognosis based on immuno-glycolysis-related genes
OBJECTIVES: This study developed a new model for risk assessment of immuno-glycolysis-related genes for lung adenocarcinoma (LUAD) patients to predict prognosis and immunotherapy efficacy. METHODS: LUAD samples and data obtained from the Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) d...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10025218/ https://www.ncbi.nlm.nih.gov/pubmed/36447119 http://dx.doi.org/10.1007/s12094-022-03000-9 |
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author | Zhang, Yuting Qin, Wen Zhang, Wenhui Qin, Yi Zhou, You Lang |
author_facet | Zhang, Yuting Qin, Wen Zhang, Wenhui Qin, Yi Zhou, You Lang |
author_sort | Zhang, Yuting |
collection | PubMed |
description | OBJECTIVES: This study developed a new model for risk assessment of immuno-glycolysis-related genes for lung adenocarcinoma (LUAD) patients to predict prognosis and immunotherapy efficacy. METHODS: LUAD samples and data obtained from the Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases are used as training and test columns, respectively. Twenty-two (22) immuno-glycolysis-related genes were screened, the patients diagnosed with LUAD were divided into two molecular subtypes by consensus clustering of these genes. The initial prognosis model was developed using the multiple regression analysis method and Receiver Operating characteristic (ROC) analysis was used to verify its predictive potential. Gene set enrichment analysis (GSEA) showed the immune activities and pathways in different risk populations, we calculated immune checkpoints, immune escape, immune phenomena (IPS), and tumor mutation burden (TMB) based on TCGA datasets. Finally, the relationship between the model and drug sensitivity was analyzed. RESULTS: Fifteen (15) key differentially expressed genes (DEGs) with prognostic value were screened and a new prognostic model was constructed. Four hundred and forty-three (443) samples were grouped into two different risk cohorts based on median model risk values. It was observed that survival rates in high-risk groups were significantly low. ROC curves were used to evaluate the model’s accuracy in determining the survival time and clinical outcome of LUAD patients. Cox analysis of various clinical factors proved that the risk score has great potential as an independent prognostic factor. The results of immunological analysis can reveal the immune infiltration and the activity of related functions in different pathways in the two risk groups, and immunotherapy was more effective in low-risk patients. Most chemotherapeutic agents are more sensitive to low-risk patients, making them more likely to benefit. CONCLUSION: A novel prognostic model for LUAD patients was established based on IGRG, which could more accurately predict the prognosis and an effective immunotherapy approach for patients. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12094-022-03000-9. |
format | Online Article Text |
id | pubmed-10025218 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-100252182023-03-21 Guidelines on lung adenocarcinoma prognosis based on immuno-glycolysis-related genes Zhang, Yuting Qin, Wen Zhang, Wenhui Qin, Yi Zhou, You Lang Clin Transl Oncol Research Article OBJECTIVES: This study developed a new model for risk assessment of immuno-glycolysis-related genes for lung adenocarcinoma (LUAD) patients to predict prognosis and immunotherapy efficacy. METHODS: LUAD samples and data obtained from the Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases are used as training and test columns, respectively. Twenty-two (22) immuno-glycolysis-related genes were screened, the patients diagnosed with LUAD were divided into two molecular subtypes by consensus clustering of these genes. The initial prognosis model was developed using the multiple regression analysis method and Receiver Operating characteristic (ROC) analysis was used to verify its predictive potential. Gene set enrichment analysis (GSEA) showed the immune activities and pathways in different risk populations, we calculated immune checkpoints, immune escape, immune phenomena (IPS), and tumor mutation burden (TMB) based on TCGA datasets. Finally, the relationship between the model and drug sensitivity was analyzed. RESULTS: Fifteen (15) key differentially expressed genes (DEGs) with prognostic value were screened and a new prognostic model was constructed. Four hundred and forty-three (443) samples were grouped into two different risk cohorts based on median model risk values. It was observed that survival rates in high-risk groups were significantly low. ROC curves were used to evaluate the model’s accuracy in determining the survival time and clinical outcome of LUAD patients. Cox analysis of various clinical factors proved that the risk score has great potential as an independent prognostic factor. The results of immunological analysis can reveal the immune infiltration and the activity of related functions in different pathways in the two risk groups, and immunotherapy was more effective in low-risk patients. Most chemotherapeutic agents are more sensitive to low-risk patients, making them more likely to benefit. CONCLUSION: A novel prognostic model for LUAD patients was established based on IGRG, which could more accurately predict the prognosis and an effective immunotherapy approach for patients. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12094-022-03000-9. Springer International Publishing 2022-11-29 2023 /pmc/articles/PMC10025218/ /pubmed/36447119 http://dx.doi.org/10.1007/s12094-022-03000-9 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Research Article Zhang, Yuting Qin, Wen Zhang, Wenhui Qin, Yi Zhou, You Lang Guidelines on lung adenocarcinoma prognosis based on immuno-glycolysis-related genes |
title | Guidelines on lung adenocarcinoma prognosis based on immuno-glycolysis-related genes |
title_full | Guidelines on lung adenocarcinoma prognosis based on immuno-glycolysis-related genes |
title_fullStr | Guidelines on lung adenocarcinoma prognosis based on immuno-glycolysis-related genes |
title_full_unstemmed | Guidelines on lung adenocarcinoma prognosis based on immuno-glycolysis-related genes |
title_short | Guidelines on lung adenocarcinoma prognosis based on immuno-glycolysis-related genes |
title_sort | guidelines on lung adenocarcinoma prognosis based on immuno-glycolysis-related genes |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10025218/ https://www.ncbi.nlm.nih.gov/pubmed/36447119 http://dx.doi.org/10.1007/s12094-022-03000-9 |
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