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Machine Learning Full NMR Chemical Shift Tensors of Silicon Oxides with Equivariant Graph Neural Networks
[Image: see text] The nuclear magnetic resonance (NMR) chemical shift tensor is a highly sensitive probe of the electronic structure of an atom and furthermore its local structure. Recently, machine learning has been applied to NMR in the prediction of isotropic chemical shifts from a structure. Cur...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10026072/ https://www.ncbi.nlm.nih.gov/pubmed/36862997 http://dx.doi.org/10.1021/acs.jpca.2c07530 |
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author | Venetos, Maxwell C. Wen, Mingjian Persson, Kristin A. |
author_facet | Venetos, Maxwell C. Wen, Mingjian Persson, Kristin A. |
author_sort | Venetos, Maxwell C. |
collection | PubMed |
description | [Image: see text] The nuclear magnetic resonance (NMR) chemical shift tensor is a highly sensitive probe of the electronic structure of an atom and furthermore its local structure. Recently, machine learning has been applied to NMR in the prediction of isotropic chemical shifts from a structure. Current machine learning models, however, often ignore the full chemical shift tensor for the easier-to-predict isotropic chemical shift, effectively ignoring a multitude of structural information available in the NMR chemical shift tensor. Here we use an equivariant graph neural network (GNN) to predict full (29)Si chemical shift tensors in silicate materials. The equivariant GNN model predicts full tensors to a mean absolute error of 1.05 ppm and is able to accurately determine the magnitude, anisotropy, and tensor orientation in a diverse set of silicon oxide local structures. When compared with other models, the equivariant GNN model outperforms the state-of-the-art machine learning models by 53%. The equivariant GNN model also outperforms historic analytical models by 57% for isotropic chemical shift and 91% for anisotropy. The software is available as a simple-to-use open-source repository, allowing similar models to be created and trained with ease. |
format | Online Article Text |
id | pubmed-10026072 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-100260722023-03-21 Machine Learning Full NMR Chemical Shift Tensors of Silicon Oxides with Equivariant Graph Neural Networks Venetos, Maxwell C. Wen, Mingjian Persson, Kristin A. J Phys Chem A [Image: see text] The nuclear magnetic resonance (NMR) chemical shift tensor is a highly sensitive probe of the electronic structure of an atom and furthermore its local structure. Recently, machine learning has been applied to NMR in the prediction of isotropic chemical shifts from a structure. Current machine learning models, however, often ignore the full chemical shift tensor for the easier-to-predict isotropic chemical shift, effectively ignoring a multitude of structural information available in the NMR chemical shift tensor. Here we use an equivariant graph neural network (GNN) to predict full (29)Si chemical shift tensors in silicate materials. The equivariant GNN model predicts full tensors to a mean absolute error of 1.05 ppm and is able to accurately determine the magnitude, anisotropy, and tensor orientation in a diverse set of silicon oxide local structures. When compared with other models, the equivariant GNN model outperforms the state-of-the-art machine learning models by 53%. The equivariant GNN model also outperforms historic analytical models by 57% for isotropic chemical shift and 91% for anisotropy. The software is available as a simple-to-use open-source repository, allowing similar models to be created and trained with ease. American Chemical Society 2023-03-02 /pmc/articles/PMC10026072/ /pubmed/36862997 http://dx.doi.org/10.1021/acs.jpca.2c07530 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Venetos, Maxwell C. Wen, Mingjian Persson, Kristin A. Machine Learning Full NMR Chemical Shift Tensors of Silicon Oxides with Equivariant Graph Neural Networks |
title | Machine Learning
Full NMR Chemical Shift Tensors of
Silicon Oxides with Equivariant Graph Neural Networks |
title_full | Machine Learning
Full NMR Chemical Shift Tensors of
Silicon Oxides with Equivariant Graph Neural Networks |
title_fullStr | Machine Learning
Full NMR Chemical Shift Tensors of
Silicon Oxides with Equivariant Graph Neural Networks |
title_full_unstemmed | Machine Learning
Full NMR Chemical Shift Tensors of
Silicon Oxides with Equivariant Graph Neural Networks |
title_short | Machine Learning
Full NMR Chemical Shift Tensors of
Silicon Oxides with Equivariant Graph Neural Networks |
title_sort | machine learning
full nmr chemical shift tensors of
silicon oxides with equivariant graph neural networks |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10026072/ https://www.ncbi.nlm.nih.gov/pubmed/36862997 http://dx.doi.org/10.1021/acs.jpca.2c07530 |
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