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Metagenomic insights into the plasma virome of Brazilian patients with prostate cancer

Growing evidence suggests that metavirome changes could be associated increased risk for malignant cell transformation. Considering Viruses have been proposed as factors for prostate cancer induction. The objective of this study was to examine the composition of the plasma metavirome of patients wit...

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Autores principales: Luciola Zanette, Dalila, Andrade Coelho, Karoline Brito Caetano, de Carvalho, Eneas, Aoki, Mateus Nobrega, Nardin, Jeanine Marie, Araújo Lalli, Larissa, dos Santos Bezerra, Rafael, Giovanetti, Marta, Simionatto Zucherato, Victória, Montenegro de Campos, Gabriel, de Souza Todão Bernardino, Jardelina, Louis Viala, Vincent, Ciccozzi, Massimo, Junior Alcantara, Luiz Carlos, Coccuzzo Sampaio, Sandra, Elias, Maria Carolina, Kashima, Simone, Tadeu Covas, Dimas, Nanev Slavov, Svetoslav
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10026895/
https://www.ncbi.nlm.nih.gov/pubmed/36950183
http://dx.doi.org/10.1080/23723556.2023.2188858
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author Luciola Zanette, Dalila
Andrade Coelho, Karoline Brito Caetano
de Carvalho, Eneas
Aoki, Mateus Nobrega
Nardin, Jeanine Marie
Araújo Lalli, Larissa
dos Santos Bezerra, Rafael
Giovanetti, Marta
Simionatto Zucherato, Victória
Montenegro de Campos, Gabriel
de Souza Todão Bernardino, Jardelina
Louis Viala, Vincent
Ciccozzi, Massimo
Junior Alcantara, Luiz Carlos
Coccuzzo Sampaio, Sandra
Elias, Maria Carolina
Kashima, Simone
Tadeu Covas, Dimas
Nanev Slavov, Svetoslav
author_facet Luciola Zanette, Dalila
Andrade Coelho, Karoline Brito Caetano
de Carvalho, Eneas
Aoki, Mateus Nobrega
Nardin, Jeanine Marie
Araújo Lalli, Larissa
dos Santos Bezerra, Rafael
Giovanetti, Marta
Simionatto Zucherato, Victória
Montenegro de Campos, Gabriel
de Souza Todão Bernardino, Jardelina
Louis Viala, Vincent
Ciccozzi, Massimo
Junior Alcantara, Luiz Carlos
Coccuzzo Sampaio, Sandra
Elias, Maria Carolina
Kashima, Simone
Tadeu Covas, Dimas
Nanev Slavov, Svetoslav
author_sort Luciola Zanette, Dalila
collection PubMed
description Growing evidence suggests that metavirome changes could be associated increased risk for malignant cell transformation. Considering Viruses have been proposed as factors for prostate cancer induction. The objective of this study was to examine the composition of the plasma metavirome of patients with prostate cancer. Blood samples were obtained from 49 male patients with primary prostate adenocarcinoma. Thirty blood donors were included as a control group. The obtained next-generation sequencing data were analyzed using a bioinformatic pipeline for virus metagenomics. Viral reads with higher abundance were assembled in contigs and analyzed taxonomically. Viral agents of interest were also confirmed by qPCR. Anelloviruses and the Human Pegivirus-1 (HPgV-1) were the most abundant component of plasma metavirome. Clinically important viruses like hepatitis C virus (HCV), cytomegalovirus and human adenovirus type C were also identified. In comparison, the blood donor virome was exclusively composed of torque teno virus types (TTV) types. The performed HPgV-1 and HCV phylogeny revealed that these viruses belong to commonly detected in Brazil genotypes. Our study sheds light on the plasma viral abundance in patients with prostatic cancer. The obtained viral diversity allowed us to separate the patients and controls, probably suggesting that malignant processes may influence virome composition. More complex and multiple approach investigations are necessary to examine the likely causal relationship between metavirome and its nvolvement in prostate cancer.
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spelling pubmed-100268952023-03-21 Metagenomic insights into the plasma virome of Brazilian patients with prostate cancer Luciola Zanette, Dalila Andrade Coelho, Karoline Brito Caetano de Carvalho, Eneas Aoki, Mateus Nobrega Nardin, Jeanine Marie Araújo Lalli, Larissa dos Santos Bezerra, Rafael Giovanetti, Marta Simionatto Zucherato, Victória Montenegro de Campos, Gabriel de Souza Todão Bernardino, Jardelina Louis Viala, Vincent Ciccozzi, Massimo Junior Alcantara, Luiz Carlos Coccuzzo Sampaio, Sandra Elias, Maria Carolina Kashima, Simone Tadeu Covas, Dimas Nanev Slavov, Svetoslav Mol Cell Oncol Author’s Views Growing evidence suggests that metavirome changes could be associated increased risk for malignant cell transformation. Considering Viruses have been proposed as factors for prostate cancer induction. The objective of this study was to examine the composition of the plasma metavirome of patients with prostate cancer. Blood samples were obtained from 49 male patients with primary prostate adenocarcinoma. Thirty blood donors were included as a control group. The obtained next-generation sequencing data were analyzed using a bioinformatic pipeline for virus metagenomics. Viral reads with higher abundance were assembled in contigs and analyzed taxonomically. Viral agents of interest were also confirmed by qPCR. Anelloviruses and the Human Pegivirus-1 (HPgV-1) were the most abundant component of plasma metavirome. Clinically important viruses like hepatitis C virus (HCV), cytomegalovirus and human adenovirus type C were also identified. In comparison, the blood donor virome was exclusively composed of torque teno virus types (TTV) types. The performed HPgV-1 and HCV phylogeny revealed that these viruses belong to commonly detected in Brazil genotypes. Our study sheds light on the plasma viral abundance in patients with prostatic cancer. The obtained viral diversity allowed us to separate the patients and controls, probably suggesting that malignant processes may influence virome composition. More complex and multiple approach investigations are necessary to examine the likely causal relationship between metavirome and its nvolvement in prostate cancer. Taylor & Francis 2023-03-15 /pmc/articles/PMC10026895/ /pubmed/36950183 http://dx.doi.org/10.1080/23723556.2023.2188858 Text en © 2023 The Author(s). Published with license by Taylor & Francis Group, LLC. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.
spellingShingle Author’s Views
Luciola Zanette, Dalila
Andrade Coelho, Karoline Brito Caetano
de Carvalho, Eneas
Aoki, Mateus Nobrega
Nardin, Jeanine Marie
Araújo Lalli, Larissa
dos Santos Bezerra, Rafael
Giovanetti, Marta
Simionatto Zucherato, Victória
Montenegro de Campos, Gabriel
de Souza Todão Bernardino, Jardelina
Louis Viala, Vincent
Ciccozzi, Massimo
Junior Alcantara, Luiz Carlos
Coccuzzo Sampaio, Sandra
Elias, Maria Carolina
Kashima, Simone
Tadeu Covas, Dimas
Nanev Slavov, Svetoslav
Metagenomic insights into the plasma virome of Brazilian patients with prostate cancer
title Metagenomic insights into the plasma virome of Brazilian patients with prostate cancer
title_full Metagenomic insights into the plasma virome of Brazilian patients with prostate cancer
title_fullStr Metagenomic insights into the plasma virome of Brazilian patients with prostate cancer
title_full_unstemmed Metagenomic insights into the plasma virome of Brazilian patients with prostate cancer
title_short Metagenomic insights into the plasma virome of Brazilian patients with prostate cancer
title_sort metagenomic insights into the plasma virome of brazilian patients with prostate cancer
topic Author’s Views
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10026895/
https://www.ncbi.nlm.nih.gov/pubmed/36950183
http://dx.doi.org/10.1080/23723556.2023.2188858
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