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Metagenomic insights into the plasma virome of Brazilian patients with prostate cancer
Growing evidence suggests that metavirome changes could be associated increased risk for malignant cell transformation. Considering Viruses have been proposed as factors for prostate cancer induction. The objective of this study was to examine the composition of the plasma metavirome of patients wit...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10026895/ https://www.ncbi.nlm.nih.gov/pubmed/36950183 http://dx.doi.org/10.1080/23723556.2023.2188858 |
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author | Luciola Zanette, Dalila Andrade Coelho, Karoline Brito Caetano de Carvalho, Eneas Aoki, Mateus Nobrega Nardin, Jeanine Marie Araújo Lalli, Larissa dos Santos Bezerra, Rafael Giovanetti, Marta Simionatto Zucherato, Victória Montenegro de Campos, Gabriel de Souza Todão Bernardino, Jardelina Louis Viala, Vincent Ciccozzi, Massimo Junior Alcantara, Luiz Carlos Coccuzzo Sampaio, Sandra Elias, Maria Carolina Kashima, Simone Tadeu Covas, Dimas Nanev Slavov, Svetoslav |
author_facet | Luciola Zanette, Dalila Andrade Coelho, Karoline Brito Caetano de Carvalho, Eneas Aoki, Mateus Nobrega Nardin, Jeanine Marie Araújo Lalli, Larissa dos Santos Bezerra, Rafael Giovanetti, Marta Simionatto Zucherato, Victória Montenegro de Campos, Gabriel de Souza Todão Bernardino, Jardelina Louis Viala, Vincent Ciccozzi, Massimo Junior Alcantara, Luiz Carlos Coccuzzo Sampaio, Sandra Elias, Maria Carolina Kashima, Simone Tadeu Covas, Dimas Nanev Slavov, Svetoslav |
author_sort | Luciola Zanette, Dalila |
collection | PubMed |
description | Growing evidence suggests that metavirome changes could be associated increased risk for malignant cell transformation. Considering Viruses have been proposed as factors for prostate cancer induction. The objective of this study was to examine the composition of the plasma metavirome of patients with prostate cancer. Blood samples were obtained from 49 male patients with primary prostate adenocarcinoma. Thirty blood donors were included as a control group. The obtained next-generation sequencing data were analyzed using a bioinformatic pipeline for virus metagenomics. Viral reads with higher abundance were assembled in contigs and analyzed taxonomically. Viral agents of interest were also confirmed by qPCR. Anelloviruses and the Human Pegivirus-1 (HPgV-1) were the most abundant component of plasma metavirome. Clinically important viruses like hepatitis C virus (HCV), cytomegalovirus and human adenovirus type C were also identified. In comparison, the blood donor virome was exclusively composed of torque teno virus types (TTV) types. The performed HPgV-1 and HCV phylogeny revealed that these viruses belong to commonly detected in Brazil genotypes. Our study sheds light on the plasma viral abundance in patients with prostatic cancer. The obtained viral diversity allowed us to separate the patients and controls, probably suggesting that malignant processes may influence virome composition. More complex and multiple approach investigations are necessary to examine the likely causal relationship between metavirome and its nvolvement in prostate cancer. |
format | Online Article Text |
id | pubmed-10026895 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-100268952023-03-21 Metagenomic insights into the plasma virome of Brazilian patients with prostate cancer Luciola Zanette, Dalila Andrade Coelho, Karoline Brito Caetano de Carvalho, Eneas Aoki, Mateus Nobrega Nardin, Jeanine Marie Araújo Lalli, Larissa dos Santos Bezerra, Rafael Giovanetti, Marta Simionatto Zucherato, Victória Montenegro de Campos, Gabriel de Souza Todão Bernardino, Jardelina Louis Viala, Vincent Ciccozzi, Massimo Junior Alcantara, Luiz Carlos Coccuzzo Sampaio, Sandra Elias, Maria Carolina Kashima, Simone Tadeu Covas, Dimas Nanev Slavov, Svetoslav Mol Cell Oncol Author’s Views Growing evidence suggests that metavirome changes could be associated increased risk for malignant cell transformation. Considering Viruses have been proposed as factors for prostate cancer induction. The objective of this study was to examine the composition of the plasma metavirome of patients with prostate cancer. Blood samples were obtained from 49 male patients with primary prostate adenocarcinoma. Thirty blood donors were included as a control group. The obtained next-generation sequencing data were analyzed using a bioinformatic pipeline for virus metagenomics. Viral reads with higher abundance were assembled in contigs and analyzed taxonomically. Viral agents of interest were also confirmed by qPCR. Anelloviruses and the Human Pegivirus-1 (HPgV-1) were the most abundant component of plasma metavirome. Clinically important viruses like hepatitis C virus (HCV), cytomegalovirus and human adenovirus type C were also identified. In comparison, the blood donor virome was exclusively composed of torque teno virus types (TTV) types. The performed HPgV-1 and HCV phylogeny revealed that these viruses belong to commonly detected in Brazil genotypes. Our study sheds light on the plasma viral abundance in patients with prostatic cancer. The obtained viral diversity allowed us to separate the patients and controls, probably suggesting that malignant processes may influence virome composition. More complex and multiple approach investigations are necessary to examine the likely causal relationship between metavirome and its nvolvement in prostate cancer. Taylor & Francis 2023-03-15 /pmc/articles/PMC10026895/ /pubmed/36950183 http://dx.doi.org/10.1080/23723556.2023.2188858 Text en © 2023 The Author(s). Published with license by Taylor & Francis Group, LLC. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent. |
spellingShingle | Author’s Views Luciola Zanette, Dalila Andrade Coelho, Karoline Brito Caetano de Carvalho, Eneas Aoki, Mateus Nobrega Nardin, Jeanine Marie Araújo Lalli, Larissa dos Santos Bezerra, Rafael Giovanetti, Marta Simionatto Zucherato, Victória Montenegro de Campos, Gabriel de Souza Todão Bernardino, Jardelina Louis Viala, Vincent Ciccozzi, Massimo Junior Alcantara, Luiz Carlos Coccuzzo Sampaio, Sandra Elias, Maria Carolina Kashima, Simone Tadeu Covas, Dimas Nanev Slavov, Svetoslav Metagenomic insights into the plasma virome of Brazilian patients with prostate cancer |
title | Metagenomic insights into the plasma virome of Brazilian patients with prostate cancer |
title_full | Metagenomic insights into the plasma virome of Brazilian patients with prostate cancer |
title_fullStr | Metagenomic insights into the plasma virome of Brazilian patients with prostate cancer |
title_full_unstemmed | Metagenomic insights into the plasma virome of Brazilian patients with prostate cancer |
title_short | Metagenomic insights into the plasma virome of Brazilian patients with prostate cancer |
title_sort | metagenomic insights into the plasma virome of brazilian patients with prostate cancer |
topic | Author’s Views |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10026895/ https://www.ncbi.nlm.nih.gov/pubmed/36950183 http://dx.doi.org/10.1080/23723556.2023.2188858 |
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