Cargando…

Recommendations for performing measurements of apparent equilibrium constants of enzyme-catalyzed reactions and for reporting the results of these measurements

The measurement of values of apparent equilibrium constants K′ for enzyme-catalyzed reactions involve a substantial number of critical details, neglect of which could lead to systematic errors. Here, interferences, impurities in the substances used, and failure to achieve equilibrium are matters of...

Descripción completa

Detalles Bibliográficos
Autores principales: Goldberg, Robert N, Giessmann, Robert T, Halling, Peter J, Kettner, Carsten, Westerhoff, Hans V
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Beilstein-Institut 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10028569/
https://www.ncbi.nlm.nih.gov/pubmed/36960304
http://dx.doi.org/10.3762/bjoc.19.26
_version_ 1784909974186491904
author Goldberg, Robert N
Giessmann, Robert T
Halling, Peter J
Kettner, Carsten
Westerhoff, Hans V
author_facet Goldberg, Robert N
Giessmann, Robert T
Halling, Peter J
Kettner, Carsten
Westerhoff, Hans V
author_sort Goldberg, Robert N
collection PubMed
description The measurement of values of apparent equilibrium constants K′ for enzyme-catalyzed reactions involve a substantial number of critical details, neglect of which could lead to systematic errors. Here, interferences, impurities in the substances used, and failure to achieve equilibrium are matters of substantial consequence. Careful reporting of results is of great importance if the results are to have archival value. Thus, attention must be paid to the identification of the substances, specification of the reaction(s), the conditions of reaction, the definition of the equilibrium constant(s) and standard states, the use of standard nomenclature, symbols, and units, and uncertainties. This document contains a general discussion of various aspects of these equilibrium measurements as well as STRENDA (Standards for Reporting Enzymology Data) recommendations regarding the measurements and the reporting of results.
format Online
Article
Text
id pubmed-10028569
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Beilstein-Institut
record_format MEDLINE/PubMed
spelling pubmed-100285692023-03-22 Recommendations for performing measurements of apparent equilibrium constants of enzyme-catalyzed reactions and for reporting the results of these measurements Goldberg, Robert N Giessmann, Robert T Halling, Peter J Kettner, Carsten Westerhoff, Hans V Beilstein J Org Chem Commentary The measurement of values of apparent equilibrium constants K′ for enzyme-catalyzed reactions involve a substantial number of critical details, neglect of which could lead to systematic errors. Here, interferences, impurities in the substances used, and failure to achieve equilibrium are matters of substantial consequence. Careful reporting of results is of great importance if the results are to have archival value. Thus, attention must be paid to the identification of the substances, specification of the reaction(s), the conditions of reaction, the definition of the equilibrium constant(s) and standard states, the use of standard nomenclature, symbols, and units, and uncertainties. This document contains a general discussion of various aspects of these equilibrium measurements as well as STRENDA (Standards for Reporting Enzymology Data) recommendations regarding the measurements and the reporting of results. Beilstein-Institut 2023-03-15 /pmc/articles/PMC10028569/ /pubmed/36960304 http://dx.doi.org/10.3762/bjoc.19.26 Text en Copyright © 2023, Goldberg et al. https://creativecommons.org/licenses/by/4.0/This is an open access article licensed under the terms of the Beilstein-Institut Open Access License Agreement (https://www.beilstein-journals.org/bjoc/terms/terms), which is identical to the Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0 (https://creativecommons.org/licenses/by/4.0/) ). The reuse of material under this license requires that the author(s), source and license are credited. Third-party material in this article could be subject to other licenses (typically indicated in the credit line), and in this case, users are required to obtain permission from the license holder to reuse the material.
spellingShingle Commentary
Goldberg, Robert N
Giessmann, Robert T
Halling, Peter J
Kettner, Carsten
Westerhoff, Hans V
Recommendations for performing measurements of apparent equilibrium constants of enzyme-catalyzed reactions and for reporting the results of these measurements
title Recommendations for performing measurements of apparent equilibrium constants of enzyme-catalyzed reactions and for reporting the results of these measurements
title_full Recommendations for performing measurements of apparent equilibrium constants of enzyme-catalyzed reactions and for reporting the results of these measurements
title_fullStr Recommendations for performing measurements of apparent equilibrium constants of enzyme-catalyzed reactions and for reporting the results of these measurements
title_full_unstemmed Recommendations for performing measurements of apparent equilibrium constants of enzyme-catalyzed reactions and for reporting the results of these measurements
title_short Recommendations for performing measurements of apparent equilibrium constants of enzyme-catalyzed reactions and for reporting the results of these measurements
title_sort recommendations for performing measurements of apparent equilibrium constants of enzyme-catalyzed reactions and for reporting the results of these measurements
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10028569/
https://www.ncbi.nlm.nih.gov/pubmed/36960304
http://dx.doi.org/10.3762/bjoc.19.26
work_keys_str_mv AT goldbergrobertn recommendationsforperformingmeasurementsofapparentequilibriumconstantsofenzymecatalyzedreactionsandforreportingtheresultsofthesemeasurements
AT giessmannrobertt recommendationsforperformingmeasurementsofapparentequilibriumconstantsofenzymecatalyzedreactionsandforreportingtheresultsofthesemeasurements
AT hallingpeterj recommendationsforperformingmeasurementsofapparentequilibriumconstantsofenzymecatalyzedreactionsandforreportingtheresultsofthesemeasurements
AT kettnercarsten recommendationsforperformingmeasurementsofapparentequilibriumconstantsofenzymecatalyzedreactionsandforreportingtheresultsofthesemeasurements
AT westerhoffhansv recommendationsforperformingmeasurementsofapparentequilibriumconstantsofenzymecatalyzedreactionsandforreportingtheresultsofthesemeasurements