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Identification of mitochondria-related key gene and association with immune cells infiltration in intervertebral disc degeneration
Intervertebral disc (IVD) degeneration and its inflammatory microenvironment can result in discogenic pain, which has been shown to stem from the nucleus pulposus (NP). Increasing evidence suggests that mitochondrial related genes are strictly connected to cell functionality and, importantly, it can...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10030706/ https://www.ncbi.nlm.nih.gov/pubmed/36968589 http://dx.doi.org/10.3389/fgene.2023.1135767 |
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author | Guo, Wei Mu, Kun Li, Wen-Shuai Gao, Shun-Xing Wang, Lin-Feng Li, Xiao-Ming Zhao, Jian-Yong |
author_facet | Guo, Wei Mu, Kun Li, Wen-Shuai Gao, Shun-Xing Wang, Lin-Feng Li, Xiao-Ming Zhao, Jian-Yong |
author_sort | Guo, Wei |
collection | PubMed |
description | Intervertebral disc (IVD) degeneration and its inflammatory microenvironment can result in discogenic pain, which has been shown to stem from the nucleus pulposus (NP). Increasing evidence suggests that mitochondrial related genes are strictly connected to cell functionality and, importantly, it can regulate cell immune activity in response to damaged associated signals. Therefore, identification of mitochondria related genes might offer new diagnostic markers and therapeutic targets for IVD degeneration. In this study, we identified key genes involved in NP tissue immune cell infiltration during IVD degeneration by bioinformatic analysis. The key modules were screened by weighted gene co-expression network analysis (WCGNA). Characteristic genes were identified by random forest analysis. Then gene set enrichment analysis (GSEA) was used to explore the signaling pathways associated with the signature genes. Subsequently, CIBERSORT was used to classify the infiltration of immune cells. Function of the hub gene was confirmed by PCR, Western blotting and ELISA. Finally, we identified MFN2 as a crucial molecule in the process of NP cell pyroptosis and NLRP3 inflammasome activation. We speculate that the increased MFN2 expression in NP tissue along with the infiltration of CD8(+) T cells, NK cell and neutrophils play important roles in the pathogenesis of IVD degeneration. |
format | Online Article Text |
id | pubmed-10030706 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-100307062023-03-23 Identification of mitochondria-related key gene and association with immune cells infiltration in intervertebral disc degeneration Guo, Wei Mu, Kun Li, Wen-Shuai Gao, Shun-Xing Wang, Lin-Feng Li, Xiao-Ming Zhao, Jian-Yong Front Genet Genetics Intervertebral disc (IVD) degeneration and its inflammatory microenvironment can result in discogenic pain, which has been shown to stem from the nucleus pulposus (NP). Increasing evidence suggests that mitochondrial related genes are strictly connected to cell functionality and, importantly, it can regulate cell immune activity in response to damaged associated signals. Therefore, identification of mitochondria related genes might offer new diagnostic markers and therapeutic targets for IVD degeneration. In this study, we identified key genes involved in NP tissue immune cell infiltration during IVD degeneration by bioinformatic analysis. The key modules were screened by weighted gene co-expression network analysis (WCGNA). Characteristic genes were identified by random forest analysis. Then gene set enrichment analysis (GSEA) was used to explore the signaling pathways associated with the signature genes. Subsequently, CIBERSORT was used to classify the infiltration of immune cells. Function of the hub gene was confirmed by PCR, Western blotting and ELISA. Finally, we identified MFN2 as a crucial molecule in the process of NP cell pyroptosis and NLRP3 inflammasome activation. We speculate that the increased MFN2 expression in NP tissue along with the infiltration of CD8(+) T cells, NK cell and neutrophils play important roles in the pathogenesis of IVD degeneration. Frontiers Media S.A. 2023-03-08 /pmc/articles/PMC10030706/ /pubmed/36968589 http://dx.doi.org/10.3389/fgene.2023.1135767 Text en Copyright © 2023 Guo, Mu, Li, Gao, Wang, Li and Zhao. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Guo, Wei Mu, Kun Li, Wen-Shuai Gao, Shun-Xing Wang, Lin-Feng Li, Xiao-Ming Zhao, Jian-Yong Identification of mitochondria-related key gene and association with immune cells infiltration in intervertebral disc degeneration |
title | Identification of mitochondria-related key gene and association with immune cells infiltration in intervertebral disc degeneration |
title_full | Identification of mitochondria-related key gene and association with immune cells infiltration in intervertebral disc degeneration |
title_fullStr | Identification of mitochondria-related key gene and association with immune cells infiltration in intervertebral disc degeneration |
title_full_unstemmed | Identification of mitochondria-related key gene and association with immune cells infiltration in intervertebral disc degeneration |
title_short | Identification of mitochondria-related key gene and association with immune cells infiltration in intervertebral disc degeneration |
title_sort | identification of mitochondria-related key gene and association with immune cells infiltration in intervertebral disc degeneration |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10030706/ https://www.ncbi.nlm.nih.gov/pubmed/36968589 http://dx.doi.org/10.3389/fgene.2023.1135767 |
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