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Bayesian feature selection for radiomics using reliability metrics

Introduction: Imaging of tumors is a standard step in diagnosing cancer and making subsequent treatment decisions. The field of radiomics aims to develop imaging based biomarkers using methods rooted in artificial intelligence applied to medical imaging. However, a challenging aspect of developing p...

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Autores principales: Shoemaker, Katherine, Ger, Rachel, Court, Laurence E., Aerts, Hugo, Vannucci, Marina, Peterson, Christine B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10030957/
https://www.ncbi.nlm.nih.gov/pubmed/36968604
http://dx.doi.org/10.3389/fgene.2023.1112914
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author Shoemaker, Katherine
Ger, Rachel
Court, Laurence E.
Aerts, Hugo
Vannucci, Marina
Peterson, Christine B.
author_facet Shoemaker, Katherine
Ger, Rachel
Court, Laurence E.
Aerts, Hugo
Vannucci, Marina
Peterson, Christine B.
author_sort Shoemaker, Katherine
collection PubMed
description Introduction: Imaging of tumors is a standard step in diagnosing cancer and making subsequent treatment decisions. The field of radiomics aims to develop imaging based biomarkers using methods rooted in artificial intelligence applied to medical imaging. However, a challenging aspect of developing predictive models for clinical use is that many quantitative features derived from image data exhibit instability or lack of reproducibility across different imaging systems or image-processing pipelines. Methods: To address this challenge, we propose a Bayesian sparse modeling approach for image classification based on radiomic features, where the inclusion of more reliable features is favored via a probit prior formulation. Results: We verify through simulation studies that this approach can improve feature selection and prediction given correct prior information. Finally, we illustrate the method with an application to the classification of head and neck cancer patients by human papillomavirus status, using as our prior information a reliability metric quantifying feature stability across different imaging systems.
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spelling pubmed-100309572023-03-23 Bayesian feature selection for radiomics using reliability metrics Shoemaker, Katherine Ger, Rachel Court, Laurence E. Aerts, Hugo Vannucci, Marina Peterson, Christine B. Front Genet Genetics Introduction: Imaging of tumors is a standard step in diagnosing cancer and making subsequent treatment decisions. The field of radiomics aims to develop imaging based biomarkers using methods rooted in artificial intelligence applied to medical imaging. However, a challenging aspect of developing predictive models for clinical use is that many quantitative features derived from image data exhibit instability or lack of reproducibility across different imaging systems or image-processing pipelines. Methods: To address this challenge, we propose a Bayesian sparse modeling approach for image classification based on radiomic features, where the inclusion of more reliable features is favored via a probit prior formulation. Results: We verify through simulation studies that this approach can improve feature selection and prediction given correct prior information. Finally, we illustrate the method with an application to the classification of head and neck cancer patients by human papillomavirus status, using as our prior information a reliability metric quantifying feature stability across different imaging systems. Frontiers Media S.A. 2023-03-08 /pmc/articles/PMC10030957/ /pubmed/36968604 http://dx.doi.org/10.3389/fgene.2023.1112914 Text en Copyright © 2023 Shoemaker, Ger, Court, Aerts, Vannucci and Peterson. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Shoemaker, Katherine
Ger, Rachel
Court, Laurence E.
Aerts, Hugo
Vannucci, Marina
Peterson, Christine B.
Bayesian feature selection for radiomics using reliability metrics
title Bayesian feature selection for radiomics using reliability metrics
title_full Bayesian feature selection for radiomics using reliability metrics
title_fullStr Bayesian feature selection for radiomics using reliability metrics
title_full_unstemmed Bayesian feature selection for radiomics using reliability metrics
title_short Bayesian feature selection for radiomics using reliability metrics
title_sort bayesian feature selection for radiomics using reliability metrics
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10030957/
https://www.ncbi.nlm.nih.gov/pubmed/36968604
http://dx.doi.org/10.3389/fgene.2023.1112914
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