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Maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements

The rapid effects of estradiol on membrane receptors are in the focus of the estradiol research field, however, the molecular mechanisms of these non-classical estradiol actions are poorly understood. Since the lateral diffusion of membrane receptors is an important indicator of their function, a de...

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Autores principales: Makkai, Geza, Abraham, Istvan M., Barabas, Klaudia, Godo, Soma, Ernszt, David, Kovacs, Tamas, Kovacs, Gergely, Szocs, Szilard, Janosi, Tibor Z.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10031098/
https://www.ncbi.nlm.nih.gov/pubmed/36970656
http://dx.doi.org/10.3389/fninf.2023.1005936
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author Makkai, Geza
Abraham, Istvan M.
Barabas, Klaudia
Godo, Soma
Ernszt, David
Kovacs, Tamas
Kovacs, Gergely
Szocs, Szilard
Janosi, Tibor Z.
author_facet Makkai, Geza
Abraham, Istvan M.
Barabas, Klaudia
Godo, Soma
Ernszt, David
Kovacs, Tamas
Kovacs, Gergely
Szocs, Szilard
Janosi, Tibor Z.
author_sort Makkai, Geza
collection PubMed
description The rapid effects of estradiol on membrane receptors are in the focus of the estradiol research field, however, the molecular mechanisms of these non-classical estradiol actions are poorly understood. Since the lateral diffusion of membrane receptors is an important indicator of their function, a deeper understanding of the underlying mechanisms of non-classical estradiol actions can be achieved by investigating receptor dynamics. Diffusion coefficient is a crucial and widely used parameter to characterize the movement of receptors in the cell membrane. The aim of this study was to investigate the differences between maximum likelihood-based estimation (MLE) and mean square displacement (MSD) based calculation of diffusion coefficients. In this work we applied both MSD and MLE to calculate diffusion coefficients. Single particle trajectories were extracted from simulation as well as from α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptor tracking in live estradiol-treated differentiated PC12 (dPC12) cells. The comparison of the obtained diffusion coefficients revealed the superiority of MLE over the generally used MSD analysis. Our results suggest the use of the MLE of diffusion coefficients because as it has a better performance, especially for large localization errors or slow receptor movements.
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spelling pubmed-100310982023-03-23 Maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements Makkai, Geza Abraham, Istvan M. Barabas, Klaudia Godo, Soma Ernszt, David Kovacs, Tamas Kovacs, Gergely Szocs, Szilard Janosi, Tibor Z. Front Neuroinform Neuroscience The rapid effects of estradiol on membrane receptors are in the focus of the estradiol research field, however, the molecular mechanisms of these non-classical estradiol actions are poorly understood. Since the lateral diffusion of membrane receptors is an important indicator of their function, a deeper understanding of the underlying mechanisms of non-classical estradiol actions can be achieved by investigating receptor dynamics. Diffusion coefficient is a crucial and widely used parameter to characterize the movement of receptors in the cell membrane. The aim of this study was to investigate the differences between maximum likelihood-based estimation (MLE) and mean square displacement (MSD) based calculation of diffusion coefficients. In this work we applied both MSD and MLE to calculate diffusion coefficients. Single particle trajectories were extracted from simulation as well as from α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptor tracking in live estradiol-treated differentiated PC12 (dPC12) cells. The comparison of the obtained diffusion coefficients revealed the superiority of MLE over the generally used MSD analysis. Our results suggest the use of the MLE of diffusion coefficients because as it has a better performance, especially for large localization errors or slow receptor movements. Frontiers Media S.A. 2023-03-08 /pmc/articles/PMC10031098/ /pubmed/36970656 http://dx.doi.org/10.3389/fninf.2023.1005936 Text en Copyright © 2023 Makkai, Abraham, Barabas, Godo, Ernszt, Kovacs, Kovacs, Szocs and Janosi. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Makkai, Geza
Abraham, Istvan M.
Barabas, Klaudia
Godo, Soma
Ernszt, David
Kovacs, Tamas
Kovacs, Gergely
Szocs, Szilard
Janosi, Tibor Z.
Maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements
title Maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements
title_full Maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements
title_fullStr Maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements
title_full_unstemmed Maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements
title_short Maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements
title_sort maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10031098/
https://www.ncbi.nlm.nih.gov/pubmed/36970656
http://dx.doi.org/10.3389/fninf.2023.1005936
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