Cargando…
Maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements
The rapid effects of estradiol on membrane receptors are in the focus of the estradiol research field, however, the molecular mechanisms of these non-classical estradiol actions are poorly understood. Since the lateral diffusion of membrane receptors is an important indicator of their function, a de...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10031098/ https://www.ncbi.nlm.nih.gov/pubmed/36970656 http://dx.doi.org/10.3389/fninf.2023.1005936 |
_version_ | 1784910529184137216 |
---|---|
author | Makkai, Geza Abraham, Istvan M. Barabas, Klaudia Godo, Soma Ernszt, David Kovacs, Tamas Kovacs, Gergely Szocs, Szilard Janosi, Tibor Z. |
author_facet | Makkai, Geza Abraham, Istvan M. Barabas, Klaudia Godo, Soma Ernszt, David Kovacs, Tamas Kovacs, Gergely Szocs, Szilard Janosi, Tibor Z. |
author_sort | Makkai, Geza |
collection | PubMed |
description | The rapid effects of estradiol on membrane receptors are in the focus of the estradiol research field, however, the molecular mechanisms of these non-classical estradiol actions are poorly understood. Since the lateral diffusion of membrane receptors is an important indicator of their function, a deeper understanding of the underlying mechanisms of non-classical estradiol actions can be achieved by investigating receptor dynamics. Diffusion coefficient is a crucial and widely used parameter to characterize the movement of receptors in the cell membrane. The aim of this study was to investigate the differences between maximum likelihood-based estimation (MLE) and mean square displacement (MSD) based calculation of diffusion coefficients. In this work we applied both MSD and MLE to calculate diffusion coefficients. Single particle trajectories were extracted from simulation as well as from α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptor tracking in live estradiol-treated differentiated PC12 (dPC12) cells. The comparison of the obtained diffusion coefficients revealed the superiority of MLE over the generally used MSD analysis. Our results suggest the use of the MLE of diffusion coefficients because as it has a better performance, especially for large localization errors or slow receptor movements. |
format | Online Article Text |
id | pubmed-10031098 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-100310982023-03-23 Maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements Makkai, Geza Abraham, Istvan M. Barabas, Klaudia Godo, Soma Ernszt, David Kovacs, Tamas Kovacs, Gergely Szocs, Szilard Janosi, Tibor Z. Front Neuroinform Neuroscience The rapid effects of estradiol on membrane receptors are in the focus of the estradiol research field, however, the molecular mechanisms of these non-classical estradiol actions are poorly understood. Since the lateral diffusion of membrane receptors is an important indicator of their function, a deeper understanding of the underlying mechanisms of non-classical estradiol actions can be achieved by investigating receptor dynamics. Diffusion coefficient is a crucial and widely used parameter to characterize the movement of receptors in the cell membrane. The aim of this study was to investigate the differences between maximum likelihood-based estimation (MLE) and mean square displacement (MSD) based calculation of diffusion coefficients. In this work we applied both MSD and MLE to calculate diffusion coefficients. Single particle trajectories were extracted from simulation as well as from α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptor tracking in live estradiol-treated differentiated PC12 (dPC12) cells. The comparison of the obtained diffusion coefficients revealed the superiority of MLE over the generally used MSD analysis. Our results suggest the use of the MLE of diffusion coefficients because as it has a better performance, especially for large localization errors or slow receptor movements. Frontiers Media S.A. 2023-03-08 /pmc/articles/PMC10031098/ /pubmed/36970656 http://dx.doi.org/10.3389/fninf.2023.1005936 Text en Copyright © 2023 Makkai, Abraham, Barabas, Godo, Ernszt, Kovacs, Kovacs, Szocs and Janosi. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Makkai, Geza Abraham, Istvan M. Barabas, Klaudia Godo, Soma Ernszt, David Kovacs, Tamas Kovacs, Gergely Szocs, Szilard Janosi, Tibor Z. Maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements |
title | Maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements |
title_full | Maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements |
title_fullStr | Maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements |
title_full_unstemmed | Maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements |
title_short | Maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements |
title_sort | maximum likelihood-based estimation of diffusion coefficient is quick and reliable method for analyzing estradiol actions on surface receptor movements |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10031098/ https://www.ncbi.nlm.nih.gov/pubmed/36970656 http://dx.doi.org/10.3389/fninf.2023.1005936 |
work_keys_str_mv | AT makkaigeza maximumlikelihoodbasedestimationofdiffusioncoefficientisquickandreliablemethodforanalyzingestradiolactionsonsurfacereceptormovements AT abrahamistvanm maximumlikelihoodbasedestimationofdiffusioncoefficientisquickandreliablemethodforanalyzingestradiolactionsonsurfacereceptormovements AT barabasklaudia maximumlikelihoodbasedestimationofdiffusioncoefficientisquickandreliablemethodforanalyzingestradiolactionsonsurfacereceptormovements AT godosoma maximumlikelihoodbasedestimationofdiffusioncoefficientisquickandreliablemethodforanalyzingestradiolactionsonsurfacereceptormovements AT ernsztdavid maximumlikelihoodbasedestimationofdiffusioncoefficientisquickandreliablemethodforanalyzingestradiolactionsonsurfacereceptormovements AT kovacstamas maximumlikelihoodbasedestimationofdiffusioncoefficientisquickandreliablemethodforanalyzingestradiolactionsonsurfacereceptormovements AT kovacsgergely maximumlikelihoodbasedestimationofdiffusioncoefficientisquickandreliablemethodforanalyzingestradiolactionsonsurfacereceptormovements AT szocsszilard maximumlikelihoodbasedestimationofdiffusioncoefficientisquickandreliablemethodforanalyzingestradiolactionsonsurfacereceptormovements AT janositiborz maximumlikelihoodbasedestimationofdiffusioncoefficientisquickandreliablemethodforanalyzingestradiolactionsonsurfacereceptormovements |