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Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald’s rule of stages

The transition from a disordered to an assembly-competent monomeric state (N*) in amyloidogenic sequences is a crucial event in the aggregation cascade. Using a well-calibrated model for intrinsically disordered proteins (IDPs), we show that the N* states, which bear considerable resemblance to the...

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Autores principales: Chakraborty, Debayan, Straub, John E., Thirumalai, D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Association for the Advancement of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10032606/
https://www.ncbi.nlm.nih.gov/pubmed/36947617
http://dx.doi.org/10.1126/sciadv.add6921
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author Chakraborty, Debayan
Straub, John E.
Thirumalai, D.
author_facet Chakraborty, Debayan
Straub, John E.
Thirumalai, D.
author_sort Chakraborty, Debayan
collection PubMed
description The transition from a disordered to an assembly-competent monomeric state (N*) in amyloidogenic sequences is a crucial event in the aggregation cascade. Using a well-calibrated model for intrinsically disordered proteins (IDPs), we show that the N* states, which bear considerable resemblance to the polymorphic fibril structures found in experiments, not only appear as excitations in the free energy landscapes of Aβ40 and Aβ42, but also initiate the aggregation cascade. For Aβ42, the transitions to the different N* states are in accord with Ostwald’s rule of stages, with the least stable structures forming ahead of thermodynamically favored ones. The Aβ40 and Aβ42 monomer landscapes exhibit different extents of local frustration, which we show have profound implications in dictating subsequent self-assembly. Using kinetic transition networks, we illustrate that the most favored dimerization routes proceed via N* states. We argue that Ostwald’s rule also holds for the aggregation of fused in sarcoma and polyglutamine proteins.
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spelling pubmed-100326062023-03-23 Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald’s rule of stages Chakraborty, Debayan Straub, John E. Thirumalai, D. Sci Adv Physical and Materials Sciences The transition from a disordered to an assembly-competent monomeric state (N*) in amyloidogenic sequences is a crucial event in the aggregation cascade. Using a well-calibrated model for intrinsically disordered proteins (IDPs), we show that the N* states, which bear considerable resemblance to the polymorphic fibril structures found in experiments, not only appear as excitations in the free energy landscapes of Aβ40 and Aβ42, but also initiate the aggregation cascade. For Aβ42, the transitions to the different N* states are in accord with Ostwald’s rule of stages, with the least stable structures forming ahead of thermodynamically favored ones. The Aβ40 and Aβ42 monomer landscapes exhibit different extents of local frustration, which we show have profound implications in dictating subsequent self-assembly. Using kinetic transition networks, we illustrate that the most favored dimerization routes proceed via N* states. We argue that Ostwald’s rule also holds for the aggregation of fused in sarcoma and polyglutamine proteins. American Association for the Advancement of Science 2023-03-22 /pmc/articles/PMC10032606/ /pubmed/36947617 http://dx.doi.org/10.1126/sciadv.add6921 Text en Copyright © 2023 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License 4.0 (CC BY). https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution license (https://creativecommons.org/licenses/by/4.0/) , which permits which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Physical and Materials Sciences
Chakraborty, Debayan
Straub, John E.
Thirumalai, D.
Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald’s rule of stages
title Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald’s rule of stages
title_full Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald’s rule of stages
title_fullStr Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald’s rule of stages
title_full_unstemmed Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald’s rule of stages
title_short Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald’s rule of stages
title_sort energy landscapes of aβ monomers are sculpted in accordance with ostwald’s rule of stages
topic Physical and Materials Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10032606/
https://www.ncbi.nlm.nih.gov/pubmed/36947617
http://dx.doi.org/10.1126/sciadv.add6921
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