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Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald’s rule of stages
The transition from a disordered to an assembly-competent monomeric state (N*) in amyloidogenic sequences is a crucial event in the aggregation cascade. Using a well-calibrated model for intrinsically disordered proteins (IDPs), we show that the N* states, which bear considerable resemblance to the...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Association for the Advancement of Science
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10032606/ https://www.ncbi.nlm.nih.gov/pubmed/36947617 http://dx.doi.org/10.1126/sciadv.add6921 |
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author | Chakraborty, Debayan Straub, John E. Thirumalai, D. |
author_facet | Chakraborty, Debayan Straub, John E. Thirumalai, D. |
author_sort | Chakraborty, Debayan |
collection | PubMed |
description | The transition from a disordered to an assembly-competent monomeric state (N*) in amyloidogenic sequences is a crucial event in the aggregation cascade. Using a well-calibrated model for intrinsically disordered proteins (IDPs), we show that the N* states, which bear considerable resemblance to the polymorphic fibril structures found in experiments, not only appear as excitations in the free energy landscapes of Aβ40 and Aβ42, but also initiate the aggregation cascade. For Aβ42, the transitions to the different N* states are in accord with Ostwald’s rule of stages, with the least stable structures forming ahead of thermodynamically favored ones. The Aβ40 and Aβ42 monomer landscapes exhibit different extents of local frustration, which we show have profound implications in dictating subsequent self-assembly. Using kinetic transition networks, we illustrate that the most favored dimerization routes proceed via N* states. We argue that Ostwald’s rule also holds for the aggregation of fused in sarcoma and polyglutamine proteins. |
format | Online Article Text |
id | pubmed-10032606 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Association for the Advancement of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-100326062023-03-23 Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald’s rule of stages Chakraborty, Debayan Straub, John E. Thirumalai, D. Sci Adv Physical and Materials Sciences The transition from a disordered to an assembly-competent monomeric state (N*) in amyloidogenic sequences is a crucial event in the aggregation cascade. Using a well-calibrated model for intrinsically disordered proteins (IDPs), we show that the N* states, which bear considerable resemblance to the polymorphic fibril structures found in experiments, not only appear as excitations in the free energy landscapes of Aβ40 and Aβ42, but also initiate the aggregation cascade. For Aβ42, the transitions to the different N* states are in accord with Ostwald’s rule of stages, with the least stable structures forming ahead of thermodynamically favored ones. The Aβ40 and Aβ42 monomer landscapes exhibit different extents of local frustration, which we show have profound implications in dictating subsequent self-assembly. Using kinetic transition networks, we illustrate that the most favored dimerization routes proceed via N* states. We argue that Ostwald’s rule also holds for the aggregation of fused in sarcoma and polyglutamine proteins. American Association for the Advancement of Science 2023-03-22 /pmc/articles/PMC10032606/ /pubmed/36947617 http://dx.doi.org/10.1126/sciadv.add6921 Text en Copyright © 2023 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License 4.0 (CC BY). https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution license (https://creativecommons.org/licenses/by/4.0/) , which permits which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Physical and Materials Sciences Chakraborty, Debayan Straub, John E. Thirumalai, D. Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald’s rule of stages |
title | Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald’s rule of stages |
title_full | Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald’s rule of stages |
title_fullStr | Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald’s rule of stages |
title_full_unstemmed | Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald’s rule of stages |
title_short | Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald’s rule of stages |
title_sort | energy landscapes of aβ monomers are sculpted in accordance with ostwald’s rule of stages |
topic | Physical and Materials Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10032606/ https://www.ncbi.nlm.nih.gov/pubmed/36947617 http://dx.doi.org/10.1126/sciadv.add6921 |
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