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EARDS: EfficientNet and attention-based residual depth-wise separable convolution for joint OD and OC segmentation

BACKGROUND: Glaucoma is the leading cause of irreversible vision loss. Accurate Optic Disc (OD) and Optic Cup (OC) segmentation is beneficial for glaucoma diagnosis. In recent years, deep learning has achieved remarkable performance in OD and OC segmentation. However, OC segmentation is more challen...

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Autores principales: Zhou, Wei, Ji, Jianhang, Jiang, Yan, Wang, Jing, Qi, Qi, Yi, Yugen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10033527/
https://www.ncbi.nlm.nih.gov/pubmed/36968487
http://dx.doi.org/10.3389/fnins.2023.1139181
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author Zhou, Wei
Ji, Jianhang
Jiang, Yan
Wang, Jing
Qi, Qi
Yi, Yugen
author_facet Zhou, Wei
Ji, Jianhang
Jiang, Yan
Wang, Jing
Qi, Qi
Yi, Yugen
author_sort Zhou, Wei
collection PubMed
description BACKGROUND: Glaucoma is the leading cause of irreversible vision loss. Accurate Optic Disc (OD) and Optic Cup (OC) segmentation is beneficial for glaucoma diagnosis. In recent years, deep learning has achieved remarkable performance in OD and OC segmentation. However, OC segmentation is more challenging than OD segmentation due to its large shape variability and cryptic boundaries that leads to performance degradation when applying the deep learning models to segment OC. Moreover, the OD and OC are segmented independently, or pre-requirement is necessary to extract the OD centered region with pre-processing procedures. METHODS: In this paper, we suggest a one-stage network named EfficientNet and Attention-based Residual Depth-wise Separable Convolution (EARDS) for joint OD and OC segmentation. In EARDS, EfficientNet-b0 is regarded as an encoder to capture more effective boundary representations. To suppress irrelevant regions and highlight features of fine OD and OC regions, Attention Gate (AG) is incorporated into the skip connection. Also, Residual Depth-wise Separable Convolution (RDSC) block is developed to improve the segmentation performance and computational efficiency. Further, a novel decoder network is proposed by combining AG, RDSC block and Batch Normalization (BN) layer, which is utilized to eliminate the vanishing gradient problem and accelerate the convergence speed. Finally, the focal loss and dice loss as a weighted combination is designed to guide the network for accurate OD and OC segmentation. RESULTS AND DISCUSSION: Extensive experimental results on the Drishti-GS and REFUGE datasets indicate that the proposed EARDS outperforms the state-of-the-art approaches. The code is available at https://github.com/M4cheal/EARDS.
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spelling pubmed-100335272023-03-24 EARDS: EfficientNet and attention-based residual depth-wise separable convolution for joint OD and OC segmentation Zhou, Wei Ji, Jianhang Jiang, Yan Wang, Jing Qi, Qi Yi, Yugen Front Neurosci Neuroscience BACKGROUND: Glaucoma is the leading cause of irreversible vision loss. Accurate Optic Disc (OD) and Optic Cup (OC) segmentation is beneficial for glaucoma diagnosis. In recent years, deep learning has achieved remarkable performance in OD and OC segmentation. However, OC segmentation is more challenging than OD segmentation due to its large shape variability and cryptic boundaries that leads to performance degradation when applying the deep learning models to segment OC. Moreover, the OD and OC are segmented independently, or pre-requirement is necessary to extract the OD centered region with pre-processing procedures. METHODS: In this paper, we suggest a one-stage network named EfficientNet and Attention-based Residual Depth-wise Separable Convolution (EARDS) for joint OD and OC segmentation. In EARDS, EfficientNet-b0 is regarded as an encoder to capture more effective boundary representations. To suppress irrelevant regions and highlight features of fine OD and OC regions, Attention Gate (AG) is incorporated into the skip connection. Also, Residual Depth-wise Separable Convolution (RDSC) block is developed to improve the segmentation performance and computational efficiency. Further, a novel decoder network is proposed by combining AG, RDSC block and Batch Normalization (BN) layer, which is utilized to eliminate the vanishing gradient problem and accelerate the convergence speed. Finally, the focal loss and dice loss as a weighted combination is designed to guide the network for accurate OD and OC segmentation. RESULTS AND DISCUSSION: Extensive experimental results on the Drishti-GS and REFUGE datasets indicate that the proposed EARDS outperforms the state-of-the-art approaches. The code is available at https://github.com/M4cheal/EARDS. Frontiers Media S.A. 2023-03-09 /pmc/articles/PMC10033527/ /pubmed/36968487 http://dx.doi.org/10.3389/fnins.2023.1139181 Text en Copyright © 2023 Zhou, Ji, Jiang, Wang, Qi and Yi. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Zhou, Wei
Ji, Jianhang
Jiang, Yan
Wang, Jing
Qi, Qi
Yi, Yugen
EARDS: EfficientNet and attention-based residual depth-wise separable convolution for joint OD and OC segmentation
title EARDS: EfficientNet and attention-based residual depth-wise separable convolution for joint OD and OC segmentation
title_full EARDS: EfficientNet and attention-based residual depth-wise separable convolution for joint OD and OC segmentation
title_fullStr EARDS: EfficientNet and attention-based residual depth-wise separable convolution for joint OD and OC segmentation
title_full_unstemmed EARDS: EfficientNet and attention-based residual depth-wise separable convolution for joint OD and OC segmentation
title_short EARDS: EfficientNet and attention-based residual depth-wise separable convolution for joint OD and OC segmentation
title_sort eards: efficientnet and attention-based residual depth-wise separable convolution for joint od and oc segmentation
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10033527/
https://www.ncbi.nlm.nih.gov/pubmed/36968487
http://dx.doi.org/10.3389/fnins.2023.1139181
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