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Large scale crowdsourced radiotherapy segmentations across a variety of cancer anatomic sites

Clinician generated segmentation of tumor and healthy tissue regions of interest (ROIs) on medical images is crucial for radiotherapy. However, interobserver segmentation variability has long been considered a significant detriment to the implementation of high-quality and consistent radiotherapy do...

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Autores principales: Wahid, Kareem A., Lin, Diana, Sahin, Onur, Cislo, Michael, Nelms, Benjamin E., He, Renjie, Naser, Mohammed A., Duke, Simon, Sherer, Michael V., Christodouleas, John P., Mohamed, Abdallah S. R., Murphy, James D., Fuller, Clifton D., Gillespie, Erin F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10033824/
https://www.ncbi.nlm.nih.gov/pubmed/36949088
http://dx.doi.org/10.1038/s41597-023-02062-w
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author Wahid, Kareem A.
Lin, Diana
Sahin, Onur
Cislo, Michael
Nelms, Benjamin E.
He, Renjie
Naser, Mohammed A.
Duke, Simon
Sherer, Michael V.
Christodouleas, John P.
Mohamed, Abdallah S. R.
Murphy, James D.
Fuller, Clifton D.
Gillespie, Erin F.
author_facet Wahid, Kareem A.
Lin, Diana
Sahin, Onur
Cislo, Michael
Nelms, Benjamin E.
He, Renjie
Naser, Mohammed A.
Duke, Simon
Sherer, Michael V.
Christodouleas, John P.
Mohamed, Abdallah S. R.
Murphy, James D.
Fuller, Clifton D.
Gillespie, Erin F.
author_sort Wahid, Kareem A.
collection PubMed
description Clinician generated segmentation of tumor and healthy tissue regions of interest (ROIs) on medical images is crucial for radiotherapy. However, interobserver segmentation variability has long been considered a significant detriment to the implementation of high-quality and consistent radiotherapy dose delivery. This has prompted the increasing development of automated segmentation approaches. However, extant segmentation datasets typically only provide segmentations generated by a limited number of annotators with varying, and often unspecified, levels of expertise. In this data descriptor, numerous clinician annotators manually generated segmentations for ROIs on computed tomography images across a variety of cancer sites (breast, sarcoma, head and neck, gynecologic, gastrointestinal; one patient per cancer site) for the Contouring Collaborative for Consensus in Radiation Oncology challenge. In total, over 200 annotators (experts and non-experts) contributed using a standardized annotation platform (ProKnow). Subsequently, we converted Digital Imaging and Communications in Medicine data into Neuroimaging Informatics Technology Initiative format with standardized nomenclature for ease of use. In addition, we generated consensus segmentations for experts and non-experts using the Simultaneous Truth and Performance Level Estimation method. These standardized, structured, and easily accessible data are a valuable resource for systematically studying variability in segmentation applications.
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spelling pubmed-100338242023-03-24 Large scale crowdsourced radiotherapy segmentations across a variety of cancer anatomic sites Wahid, Kareem A. Lin, Diana Sahin, Onur Cislo, Michael Nelms, Benjamin E. He, Renjie Naser, Mohammed A. Duke, Simon Sherer, Michael V. Christodouleas, John P. Mohamed, Abdallah S. R. Murphy, James D. Fuller, Clifton D. Gillespie, Erin F. Sci Data Data Descriptor Clinician generated segmentation of tumor and healthy tissue regions of interest (ROIs) on medical images is crucial for radiotherapy. However, interobserver segmentation variability has long been considered a significant detriment to the implementation of high-quality and consistent radiotherapy dose delivery. This has prompted the increasing development of automated segmentation approaches. However, extant segmentation datasets typically only provide segmentations generated by a limited number of annotators with varying, and often unspecified, levels of expertise. In this data descriptor, numerous clinician annotators manually generated segmentations for ROIs on computed tomography images across a variety of cancer sites (breast, sarcoma, head and neck, gynecologic, gastrointestinal; one patient per cancer site) for the Contouring Collaborative for Consensus in Radiation Oncology challenge. In total, over 200 annotators (experts and non-experts) contributed using a standardized annotation platform (ProKnow). Subsequently, we converted Digital Imaging and Communications in Medicine data into Neuroimaging Informatics Technology Initiative format with standardized nomenclature for ease of use. In addition, we generated consensus segmentations for experts and non-experts using the Simultaneous Truth and Performance Level Estimation method. These standardized, structured, and easily accessible data are a valuable resource for systematically studying variability in segmentation applications. Nature Publishing Group UK 2023-03-22 /pmc/articles/PMC10033824/ /pubmed/36949088 http://dx.doi.org/10.1038/s41597-023-02062-w Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Wahid, Kareem A.
Lin, Diana
Sahin, Onur
Cislo, Michael
Nelms, Benjamin E.
He, Renjie
Naser, Mohammed A.
Duke, Simon
Sherer, Michael V.
Christodouleas, John P.
Mohamed, Abdallah S. R.
Murphy, James D.
Fuller, Clifton D.
Gillespie, Erin F.
Large scale crowdsourced radiotherapy segmentations across a variety of cancer anatomic sites
title Large scale crowdsourced radiotherapy segmentations across a variety of cancer anatomic sites
title_full Large scale crowdsourced radiotherapy segmentations across a variety of cancer anatomic sites
title_fullStr Large scale crowdsourced radiotherapy segmentations across a variety of cancer anatomic sites
title_full_unstemmed Large scale crowdsourced radiotherapy segmentations across a variety of cancer anatomic sites
title_short Large scale crowdsourced radiotherapy segmentations across a variety of cancer anatomic sites
title_sort large scale crowdsourced radiotherapy segmentations across a variety of cancer anatomic sites
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10033824/
https://www.ncbi.nlm.nih.gov/pubmed/36949088
http://dx.doi.org/10.1038/s41597-023-02062-w
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