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Exploration of the core gene signatures and mechanisms between NAFLD and sarcopenia through transcriptomic level
INTRODUCTION: The increased prevalence of non-alcoholic fatty liver disease (NAFLD) and sarcopenia among the elderly are facing a significant challenge to the world’s health systems. Our study aims to identify the coexpressed genes in NAFLD and sarcopenia patients. METHODS: We downloaded the transcr...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10033966/ https://www.ncbi.nlm.nih.gov/pubmed/36967768 http://dx.doi.org/10.3389/fendo.2023.1140804 |
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author | Xu, Ziying Yu, Zihui Li, Shang Tian, Ziyan Yuan, Jing You, Fuping |
author_facet | Xu, Ziying Yu, Zihui Li, Shang Tian, Ziyan Yuan, Jing You, Fuping |
author_sort | Xu, Ziying |
collection | PubMed |
description | INTRODUCTION: The increased prevalence of non-alcoholic fatty liver disease (NAFLD) and sarcopenia among the elderly are facing a significant challenge to the world’s health systems. Our study aims to identify the coexpressed genes in NAFLD and sarcopenia patients. METHODS: We downloaded the transcriptome data of NAFLD tissue from patients, as well as muscle tissues from sarcopenia patients, from the GEO database in order to investigate the shared transcriptional regulation mechanisms between these two diseases. Then, focusing on the genes that were frequently expressed in these diseases, together with GSVA and WGCNA, we utilized a range of analysis methods to identify the main co-expressed genes in both diseases by taking intersections. We investigated these changes after learning that they mostly affected lipid metabolism and oxidative stress injury pathways. RESULTS: By analyzing these genes and their interactions with transcription factors and proteins, we were able to identify 8 genes that share common patterns. From these 8 genes, we were possible to forecast potential future medicines. Our research raises the possibility of NAFLD and sarcopenia transcriptome regulatory pathways in aging populations. DISCUSSION: In conclusion, a complete transcription pattern mapping was carried out in order to identify the core genes, underlying biological mechanisms, and possible therapeutic targets that regulate aging in NAFLD and sarcopenia patients. It provides novel insights and proof in favor of decreasing the increased prevalence of sarcopenia in the elderly caused by NAFLD. |
format | Online Article Text |
id | pubmed-10033966 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-100339662023-03-24 Exploration of the core gene signatures and mechanisms between NAFLD and sarcopenia through transcriptomic level Xu, Ziying Yu, Zihui Li, Shang Tian, Ziyan Yuan, Jing You, Fuping Front Endocrinol (Lausanne) Endocrinology INTRODUCTION: The increased prevalence of non-alcoholic fatty liver disease (NAFLD) and sarcopenia among the elderly are facing a significant challenge to the world’s health systems. Our study aims to identify the coexpressed genes in NAFLD and sarcopenia patients. METHODS: We downloaded the transcriptome data of NAFLD tissue from patients, as well as muscle tissues from sarcopenia patients, from the GEO database in order to investigate the shared transcriptional regulation mechanisms between these two diseases. Then, focusing on the genes that were frequently expressed in these diseases, together with GSVA and WGCNA, we utilized a range of analysis methods to identify the main co-expressed genes in both diseases by taking intersections. We investigated these changes after learning that they mostly affected lipid metabolism and oxidative stress injury pathways. RESULTS: By analyzing these genes and their interactions with transcription factors and proteins, we were able to identify 8 genes that share common patterns. From these 8 genes, we were possible to forecast potential future medicines. Our research raises the possibility of NAFLD and sarcopenia transcriptome regulatory pathways in aging populations. DISCUSSION: In conclusion, a complete transcription pattern mapping was carried out in order to identify the core genes, underlying biological mechanisms, and possible therapeutic targets that regulate aging in NAFLD and sarcopenia patients. It provides novel insights and proof in favor of decreasing the increased prevalence of sarcopenia in the elderly caused by NAFLD. Frontiers Media S.A. 2023-03-09 /pmc/articles/PMC10033966/ /pubmed/36967768 http://dx.doi.org/10.3389/fendo.2023.1140804 Text en Copyright © 2023 Xu, Yu, Li, Tian, Yuan and You https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Endocrinology Xu, Ziying Yu, Zihui Li, Shang Tian, Ziyan Yuan, Jing You, Fuping Exploration of the core gene signatures and mechanisms between NAFLD and sarcopenia through transcriptomic level |
title | Exploration of the core gene signatures and mechanisms between NAFLD and sarcopenia through transcriptomic level |
title_full | Exploration of the core gene signatures and mechanisms between NAFLD and sarcopenia through transcriptomic level |
title_fullStr | Exploration of the core gene signatures and mechanisms between NAFLD and sarcopenia through transcriptomic level |
title_full_unstemmed | Exploration of the core gene signatures and mechanisms between NAFLD and sarcopenia through transcriptomic level |
title_short | Exploration of the core gene signatures and mechanisms between NAFLD and sarcopenia through transcriptomic level |
title_sort | exploration of the core gene signatures and mechanisms between nafld and sarcopenia through transcriptomic level |
topic | Endocrinology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10033966/ https://www.ncbi.nlm.nih.gov/pubmed/36967768 http://dx.doi.org/10.3389/fendo.2023.1140804 |
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