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Model-interpreted outcomes of artificial neural networks classifying immune biomarkers associated with severe infections in ICU

INTRODUCTION: Millions of deaths worldwide are a result of sepsis (viral and bacterial) and septic shock syndromes which originate from microbial infections and cause a dysregulated host immune response. These diseases share both clinical and immunological patterns that involve a plethora of biomark...

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Autores principales: Martinez, Gustavo Sganzerla, Ostadgavahi, Ali Toloue, Al-Rafat, Abdullah Mahmud, Garduno, Alexis, Cusack, Rachael, Bermejo-Martin, Jesus Francisco, Martin-Loeches, Ignacio, Kelvin, David
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10034398/
https://www.ncbi.nlm.nih.gov/pubmed/36969221
http://dx.doi.org/10.3389/fimmu.2023.1137850
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author Martinez, Gustavo Sganzerla
Ostadgavahi, Ali Toloue
Al-Rafat, Abdullah Mahmud
Garduno, Alexis
Cusack, Rachael
Bermejo-Martin, Jesus Francisco
Martin-Loeches, Ignacio
Kelvin, David
author_facet Martinez, Gustavo Sganzerla
Ostadgavahi, Ali Toloue
Al-Rafat, Abdullah Mahmud
Garduno, Alexis
Cusack, Rachael
Bermejo-Martin, Jesus Francisco
Martin-Loeches, Ignacio
Kelvin, David
author_sort Martinez, Gustavo Sganzerla
collection PubMed
description INTRODUCTION: Millions of deaths worldwide are a result of sepsis (viral and bacterial) and septic shock syndromes which originate from microbial infections and cause a dysregulated host immune response. These diseases share both clinical and immunological patterns that involve a plethora of biomarkers that can be quantified and used to explain the severity level of the disease. Therefore, we hypothesize that the severity of sepsis and septic shock in patients is a function of the concentration of biomarkers of patients. METHODS: In our work, we quantified data from 30 biomarkers with direct immune function. We used distinct Feature Selection algorithms to isolate biomarkers to be fed into machine learning algorithms, whose mapping of the decision process would allow us to propose an early diagnostic tool. RESULTS: We isolated two biomarkers, i.e., Programmed Death Ligand-1 and Myeloperoxidase, that were flagged by the interpretation of an Artificial Neural Network. The upregulation of both biomarkers was indicated as contributing to increase the severity level in sepsis (viral and bacterial induced) and septic shock patients. DISCUSSION: In conclusion, we built a function considering biomarker concentrations to explain severity among sepsis, sepsis COVID, and septic shock patients. The rules of this function include biomarkers with known medical, biological, and immunological activity, favoring the development of an early diagnosis system based in knowledge extracted from artificial intelligence.
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spelling pubmed-100343982023-03-24 Model-interpreted outcomes of artificial neural networks classifying immune biomarkers associated with severe infections in ICU Martinez, Gustavo Sganzerla Ostadgavahi, Ali Toloue Al-Rafat, Abdullah Mahmud Garduno, Alexis Cusack, Rachael Bermejo-Martin, Jesus Francisco Martin-Loeches, Ignacio Kelvin, David Front Immunol Immunology INTRODUCTION: Millions of deaths worldwide are a result of sepsis (viral and bacterial) and septic shock syndromes which originate from microbial infections and cause a dysregulated host immune response. These diseases share both clinical and immunological patterns that involve a plethora of biomarkers that can be quantified and used to explain the severity level of the disease. Therefore, we hypothesize that the severity of sepsis and septic shock in patients is a function of the concentration of biomarkers of patients. METHODS: In our work, we quantified data from 30 biomarkers with direct immune function. We used distinct Feature Selection algorithms to isolate biomarkers to be fed into machine learning algorithms, whose mapping of the decision process would allow us to propose an early diagnostic tool. RESULTS: We isolated two biomarkers, i.e., Programmed Death Ligand-1 and Myeloperoxidase, that were flagged by the interpretation of an Artificial Neural Network. The upregulation of both biomarkers was indicated as contributing to increase the severity level in sepsis (viral and bacterial induced) and septic shock patients. DISCUSSION: In conclusion, we built a function considering biomarker concentrations to explain severity among sepsis, sepsis COVID, and septic shock patients. The rules of this function include biomarkers with known medical, biological, and immunological activity, favoring the development of an early diagnosis system based in knowledge extracted from artificial intelligence. Frontiers Media S.A. 2023-03-09 /pmc/articles/PMC10034398/ /pubmed/36969221 http://dx.doi.org/10.3389/fimmu.2023.1137850 Text en Copyright © 2023 Martinez, Ostadgavahi, Al-Rafat, Garduno, Cusack, Bermejo-Martin, Martin-Loeches and Kelvin https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Martinez, Gustavo Sganzerla
Ostadgavahi, Ali Toloue
Al-Rafat, Abdullah Mahmud
Garduno, Alexis
Cusack, Rachael
Bermejo-Martin, Jesus Francisco
Martin-Loeches, Ignacio
Kelvin, David
Model-interpreted outcomes of artificial neural networks classifying immune biomarkers associated with severe infections in ICU
title Model-interpreted outcomes of artificial neural networks classifying immune biomarkers associated with severe infections in ICU
title_full Model-interpreted outcomes of artificial neural networks classifying immune biomarkers associated with severe infections in ICU
title_fullStr Model-interpreted outcomes of artificial neural networks classifying immune biomarkers associated with severe infections in ICU
title_full_unstemmed Model-interpreted outcomes of artificial neural networks classifying immune biomarkers associated with severe infections in ICU
title_short Model-interpreted outcomes of artificial neural networks classifying immune biomarkers associated with severe infections in ICU
title_sort model-interpreted outcomes of artificial neural networks classifying immune biomarkers associated with severe infections in icu
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10034398/
https://www.ncbi.nlm.nih.gov/pubmed/36969221
http://dx.doi.org/10.3389/fimmu.2023.1137850
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