Cargando…

MGIT Enriched Shotgun Metagenomics for Routine Identification of Nontuberculous Mycobacteria: a Route to Personalized Health Care

Currently, nontuberculous mycobacteria (NTM) are identified using small genomic regions, and species-level identification is often not possible. We introduce a next-generation sequencing (NGS) workflow that identifies mycobacteria to (sub)species level on the basis of the whole genome extracted from...

Descripción completa

Detalles Bibliográficos
Autores principales:	Schildkraut, Jodie A., Coolen, Jordy P. M., Severin, Heleen, Koenraad, Ellen, Aalders, Nicole, Melchers, Willem J. G., Hoefsloot, Wouter, Wertheim, Heiman F. L., van Ingen, Jakko
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society for Microbiology 2023
Materias:	Mycobacteriology and Aerobic Actinomycetes
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10035320/ https://www.ncbi.nlm.nih.gov/pubmed/36840602 http://dx.doi.org/10.1128/jcm.01318-22

Ejemplares similares

MGIT-seq for the Identification of Nontuberculous Mycobacteria and Drug Resistance: a Prospective Study
por: Fukushima, Kiyoharu, et al.
Publicado: (2023)

Direct Susceptibility Testing of Mycobacterium tuberculosis for Pyrazinamide by Use of the Bactec MGIT 960 System
por: Demers, Anne-Marie, et al.
Publicado: (2016)

Mycobacterial DNA Extraction for Whole-Genome Sequencing from Early Positive Liquid (MGIT) Cultures
por: Votintseva, Antonina A., et al.
Publicado: (2015)

Direct Whole-Genome Sequencing of Sputum Accurately Identifies Drug-Resistant Mycobacterium tuberculosis Faster than MGIT Culture Sequencing
por: Doyle, Ronan M., et al.
Publicado: (2018)

DNA Thermo-Protection Facilitates Whole-Genome Sequencing of Mycobacteria Direct from Clinical Samples
por: George, Sophie, et al.
Publicado: (2020)

Evaluation of Xpert MTB/RIF for Detection of Tuberculosis from Blood Samples of HIV-Infected Adults Confirms Mycobacterium tuberculosis Bacteremia as an Indicator of Poor Prognosis
por: Feasey, Nicholas A., et al.
Publicado: (2013)

GeneXpert MTB/RIF Version G4 for Identification of Rifampin-Resistant Tuberculosis in a Programmatic Setting
por: Osman, Muhammad, et al.
Publicado: (2014)

Evaluation of GeneXpert MTB/RIF for Diagnosis of Tuberculous Meningitis
por: Nhu, Nguyen Thi Quynh, et al.
Publicado: (2014)

Mycobacterium abscessus Complex Identification with Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry
por: Panagea, Theofano, et al.
Publicado: (2015)

Diagnostic Performance of the New Version (v2.0) of GenoType MTBDRsl Assay for Detection of Resistance to Fluoroquinolones and Second-Line Injectable Drugs: a Multicenter Study
por: Tagliani, Elisa, et al.
Publicado: (2015)

Microscopic Observation Drug Susceptibility Assay for Rapid Diagnosis of Lymph Node Tuberculosis and Detection of Drug Resistance
por: Kirwan, Daniela E., et al.
Publicado: (2016)

Highly Multiplexed Proteomic Analysis of Quantiferon Supernatants To Identify Biomarkers of Latent Tuberculosis Infection
por: De Groote, Mary Ann, et al.
Publicado: (2017)

Whole-Genome Sequencing of Mycobacterium tuberculosis Provides Insight into the Evolution and Genetic Composition of Drug-Resistant Tuberculosis in Belarus
por: Wollenberg, Kurt R., et al.
Publicado: (2017)

Xpert MTB/RIF Assay Shows Faster Clearance of Mycobacterium tuberculosis DNA with Higher Levels of Rifapentine Exposure
por: Jayakumar, A., et al.
Publicado: (2016)

Stool Culture for Diagnosis of Pulmonary Tuberculosis in Children
por: Walters, Elisabetta, et al.
Publicado: (2017)

Occurrence and Nature of Double Alleles in Variable-Number Tandem-Repeat Patterns of More than 8,000 Mycobacterium tuberculosis Complex Isolates in The Netherlands
por: Jajou, Rana, et al.
Publicado: (2018)

Rapid Microarray-Based Detection of Rifampin, Isoniazid, and Fluoroquinolone Resistance in Mycobacterium tuberculosis by Use of a Single Cartridge
por: Havlicek, Juliane, et al.
Publicado: (2018)

Evaluation of Whole-Genome Sequencing for Mycobacterial Species Identification and Drug Susceptibility Testing in a Clinical Setting: a Large-Scale Prospective Assessment of Performance against Line Probe Assays and Phenotyping
por: Quan, T. Phuong, et al.
Publicado: (2018)

Genotyping Multidrug-Resistant Mycobacterium tuberculosis from Primary Sputum and Decontaminated Sediment with an Integrated Microfluidic Amplification Microarray Test
por: Linger, Yvonne, et al.
Publicado: (2018)

Control of Artifactual Variation in Reported Intersample Relatedness during Clinical Use of a Mycobacterium tuberculosis Sequencing Pipeline
por: Wyllie, David H., et al.
Publicado: (2018)

Molecular Detection of Mycobacterium tuberculosis from Stools in Young Children by Use of a Novel Centrifugation-Free Processing Method
por: Walters, Elisabetta, et al.
Publicado: (2018)

Universal Genotyping for Tuberculosis Prevention Programs: a 5-Year Comparison with On-Request Genotyping
por: Guthrie, Jennifer L., et al.
Publicado: (2018)

HIV-Associated Mycobacterium tuberculosis Bloodstream Infection Is Underdiagnosed by Single Blood Culture
por: Barr, David A., et al.
Publicado: (2018)

Validation of the FluoroType MTBDR Assay for Detection of Rifampin and Isoniazid Resistance in Mycobacterium tuberculosis Complex Isolates
por: Hillemann, Doris, et al.
Publicado: (2018)

Discovery and Validation of a Six-Marker Serum Protein Signature for the Diagnosis of Active Pulmonary Tuberculosis
por: De Groote, Mary A., et al.
Publicado: (2017)

Potential of High-Affinity, Slow Off-Rate Modified Aptamer Reagents for Mycobacterium tuberculosis Proteins as Tools for Infection Models and Diagnostic Applications
por: Russell, Theresa M., et al.
Publicado: (2017)

Added Value of Xpert MTB/RIF Ultra for Diagnosis of Pulmonary Tuberculosis in a Low-Prevalence Setting
por: Opota, Onya, et al.
Publicado: (2019)

MODS-Wayne, a Colorimetric Adaptation of the Microscopic-Observation Drug Susceptibility (MODS) Assay for Detection of Mycobacterium tuberculosis Pyrazinamide Resistance from Sputum Samples
por: Alcántara, Roberto, et al.
Publicado: (2019)

Noninvasive Detection of Tuberculosis by Oral Swab Analysis
por: Luabeya, Angelique K., et al.
Publicado: (2019)

Same-Day Tools, Including Xpert Ultra and IRISA-TB, for Rapid Diagnosis of Pleural Tuberculosis: a Prospective Observational Study
por: Meldau, Richard, et al.
Publicado: (2019)

Storage of Sputum in Cetylpyridinium Chloride, OMNIgene.SPUTUM, and Ethanol Is Compatible with Molecular Tuberculosis Diagnostic Testing
por: Sanoussi, C. N’Dira, et al.
Publicado: (2019)

Identifying Mixed Mycobacterium tuberculosis Infection and Laboratory Cross-Contamination during Mycobacterial Sequencing Programs
por: Wyllie, David H., et al.
Publicado: (2018)

Use of GeneXpert Remnants for Drug Resistance Profiling and Molecular Epidemiology of Tuberculosis in Libreville, Gabon
por: Alame-Emane, Amel Kévin, et al.
Publicado: (2017)

Multicenter Noninferiority Evaluation of Hain GenoType MTBDRplus Version 2 and Nipro NTM+MDRTB Line Probe Assays for Detection of Rifampin and Isoniazid Resistance
por: Nathavitharana, Ruvandhi R., et al.
Publicado: (2016)

Rapid Drug Susceptibility Testing of Drug-Resistant Mycobacterium tuberculosis Isolates Directly from Clinical Samples by Use of Amplicon Sequencing: a Proof-of-Concept Study
por: Colman, Rebecca E., et al.
Publicado: (2016)

Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples
por: Votintseva, Antonina A., et al.
Publicado: (2017)

Utility of Second-Generation Line Probe Assay (Hain MTBDRplus) Directly on 2-Month Sputum Specimens for Monitoring Tuberculosis Treatment Response
por: Rockwood, Neesha, et al.
Publicado: (2017)

FIND Tuberculosis Strain Bank: a Resource for Researchers and Developers Working on Tests To Detect Mycobacterium tuberculosis and Related Drug Resistance
por: Tessema, Belay, et al.
Publicado: (2017)

Long Noncoding RNA and Predictive Model To Improve Diagnosis of Clinically Diagnosed Pulmonary Tuberculosis
por: Hu, Xuejiao, et al.
Publicado: (2020)

Identification of Mycobacterium tuberculosis Peptides in Serum Extracellular Vesicles from Persons with Latent Tuberculosis Infection
por: Mehaffy, Carolina, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_teo93vb59kafb6ob8q9e40jc7q